BAC Information

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BAC

Clone NameMSMg01-192H11
Chromosome8 (Build37)
Map Location 43,984,993 - 43,985,348
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192H11.T7 (MSMg01no192_h11.b1)MSMg01-192H11.TJ (MSMg01no192_h11.g1)
ACCAG382135AG382136
length1,2741,268
length of high quality
(start - end)
415 (29 - 443)381 (70 - 450)
definitionCHROMAT_FILE: MSMg01no192_h11.b1 PHD_FILE: MSMg01no192_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:52 2005CHROMAT_FILE: MSMg01no192_h11.g1 PHD_FILE: MSMg01no192_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAGCTATGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
TTAGATGCTTACACTAAAGTTGTGATTTTTTTTTTTATGCAGTAGTTCAA
CAACAGGAACAGTAAAAACAAGTAACCCGATATTTTATCCAGTATGGCAG
AAGGGAGATTGTGTCCTTTATAAATATGAAGACTTGCCGGGTGTGGTGGG
CCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATATCTGA
GTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGGGC
CACACAGAGAAACCCTGTCTCGAAAAAAAAAAATTAAGACTCAAGCTAGA
TGCTACTGTTTTTGAGCTCAAATGTGCTTCCTTCAATTAGAAAAACTATT
TCTCTTGGTGAAAGATGTGTATAGTTGAATTGTTTGTTTTTAGTTGTTTT
TTTTCTCCCCCCCCCCCCGGTTACGATTATCTTCCTAAAAAAGAGGGGGT
TACCNCGTTTTCTGCTGTGGCATTTGACAATCCAAATCCTACTGATATAA
ATATGTGTCATTAATATTTATCTTTAAAATTGTTTGTAAGACTTACCTCC
CTTTTGTGCATGTGTGTCTGCGTGTGAATGTATCGCCTATTTACTGTGTG
TTCCACAATCCTTATGAATAAGCTATCATTCCTTGTATTAGACTTTTACT
CTGTTCACTGACTCCTCATATTCATTCCTTTTCTTATATTCCCTGCCTCC
TTTCTATTCTCTTTGTCTTCTTTTCTTTTTCTCTTTTCCCACCATCCTTT
TTTCTTGTTTTTCTTTCTTTTTTTTTTCTTCTCTCTTTCCTCTCTCTTCT
CCATTCTCTTTCTTATTTTCCCCCTTCTCTTCCTTCTTCTTTTTCCTTTT
TTTCTTTTTTCCTTCTCTCCTTTTCTTTCCTACTCTCTCCTCTCTATTTG
TTCTTCTCTGTCTCTCCCTTTTACTATTTCTTCTCTTCTCATTCTTTTTC
TTTTACTCTCATCTTCCTTCTCTCCGTCTCAATCTCTATGTTCTCCTCTT
TATCATTTTTTTTCTTTTTTCTTTATATCTCTTTCATTCTTATTATTTTT
CATCTTATTTTTTATCTTCTTTCTCTCCTTTCGTTCCTTGTATGCCTACC
ATCTTATTCCCCTTACTTCTTCTACATCTCTTCCNTTCTTCGATATTCTT
ATTATATCCATCTTCTTCATTCCCTTCATCCCTCACTATATCCTTTCTAT
TCTTCTGTTCTCTTTTTCTTCTCT
NNNGGCTCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTCTTTTAAGCGACTTGAATTTGAAAGTCA
GTGATCAACAAAACGAAACTGGCAGGTATGGTTGCTCATGCCTATAATTC
CAGGAGTGCAGAAGTAGAGGCAGAAAGAGTTCTGTAATCAAGAGCAGTTG
CTCTCACTTCTGTGTTTGCCAGGCCCTGGCATAGCCTCACAAGAGACAGC
TATATCAGGGTCCTTTCACCAAAATCTTGCTTGTGTATGCAATGGTGTCA
GTGTTTGGAGGCTGATTATGGGATGGATCCCCGTGTATGACAGTTTCTAG
ATGGTCCATCCTTTCATCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTC
CTTGGGTGTTTTGTTCCCAATTCTAAGAAGGGGCAAAGTTTCCACACTTT
TTTTTTTGCCCCCCCTGAGTTTCATGTGTTTTGCAAAAAAAAGTGGGGAT
CTTGGGTATTCTAAGTTTCTGGGCTAATATCCACTTATCAGTGAGTACAT
ATCACGTGAGTTCTTTTGTGATTGGGTTACCTCACTCAAGATGATGCCCT
CCAGATCCTTCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATA
GCTGAGGGGTACTCCATTGTGTAAATGTACCACATGATGCTCACAGTCAG
CTATTGGATGGAACACAGGGCCCTCCGTGCAGTATTTAGAGAAAGTACCC
AAGGCGCTAAAGGGGTCTGCAACCCTATAGGTTGAACATCAGTTTGAACT
AACCACTATTCCCGGATTCTGTGTCTCTAGTTGCTTTTTTTCTCAAGATG
GCCTATTCGGCCATCTTTGTTAACAAAGTCCCTTTGTTCTGCAAATCTTA
TATGCCCCTGTACCCGTGGCATGCCATACCCCTCAATCTTGCATCTCTAG
TGTACTTCTACCACACTTCTAATGTATTCTTATAACTATTCCTCTTCTTT
TTCTCCTTTTATTTTCCCATTTTATTTTCTTTCTTCTTTCATCTTTTTGT
TTAATTTTTTATCTCTTAACTTCCTTCTTTATATTTTTTTATGTTTTTCC
ATTTTTATACTTTCGTTTTTTTCTACTTATTCTCTTTACATTTACCTCAT
CCTTTTATAATTATTCTCTCCCTTCATTCTCTTTCCTGTTATCTTATTTT
TCTTTTCTCACTTATTCACTTCTTCTTTCTTTTCTTTTCTCATTTTTATT
TATCTTCTTTTCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_h11.b1 MSMg01no192_h11.b1 CHROMAT_FILE:
MSMg01no192_h11.b1 PHD_FILE: MSMg01no192_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:52 2005
         (415 letters)



>mm_chr8_43984991_43985806
          Length = 816

 Score =  681 bits (352), Expect = 0.0
 Identities = 355/356 (99%), Gaps = 1/356 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcttt-agatgcttacactaaagttgtgatttttttttttatgcagtagttcaaca 74
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaattctttaagatgcttacactaaagttgtgatttttttttttatgcagtagttcaaca 299

                                                                       
Query: 75  acaggaacagtaaaaacaagtaacccgatattttatccagtatggcagaagggagattgt 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acaggaacagtaaaaacaagtaacccgatattttatccagtatggcagaagggagattgt 239

                                                                       
Query: 135 gtcctttataaatatgaagacttgccgggtgtggtgggccatgcctttaatcccagcact 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtcctttataaatatgaagacttgccgggtgtggtgggccatgcctttaatcccagcact 179

                                                                       
Query: 195 tgggaggcagaggcaggcagatatctgagttcaaggccagcctggtctacagagtgagtt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tgggaggcagaggcaggcagatatctgagttcaaggccagcctggtctacagagtgagtt 119

                                                                       
Query: 255 ccaggacagccagggggccacacagagaaaccctgtctcgaaaaaaaaaaattaagactc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ccaggacagccagggggccacacagagaaaccctgtctcgaaaaaaaaaaattaagactc 59

                                                                   
Query: 315 aagctagatgctactgtttttgagctcaaatgtgcttccttcaattagaaaaacta 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  aagctagatgctactgtttttgagctcaaatgtgcttccttcaattagaaaaacta 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 816
Length adjustment: 9
Effective length of query: 406
Effective length of database: 807
Effective search space:   327642
Effective search space used:   327642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)