BAC Information

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BAC

Clone NameMSMg01-193D19
Chromosome8 (Build37)
Map Location 58,196,805 - 58,197,091
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193D19.T7 (MSMg01no193_d19.b1)MSMg01-193D19.TJ (MSMg01no193_d19.g1)
ACCAG382626AG382627
length738743
length of high quality
(start - end)
625 (46 - 670)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no193_d19.b1 PHD_FILE: MSMg01no193_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:33 2005CHROMAT_FILE: MSMg01no193_d19.g1 PHD_FILE: MSMg01no193_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGGCATAAGGAAACACTGTTAGCACAGTCACTGTAATCAATAA
TAAATTGATCTCTAGAAGCCCTTCAGAGTCCTTAAGCAAAGCAATTTCTT
ATGGAATAGGAAAAAAAGTTTTACCAACCACACATCTTAGGGAGGGCTAA
TATCTAAATTATATGAATAACTTATAAAAGCATATATTAAGAAAATAAGT
CATCCAATAAACAATGGGGTAAAGATCTAATCAGAGAATTCTCACAAGAG
GAAACTCAAATGGCTGAGAAACGCTTGAAATGTTCAATATCCTTAGTTGT
CAGGGAAATGCAAATCTAAGCTATTTTGAAATTTAATCTTACACCCATAA
GAATAGCTAAGATAAATAAAACAAGTGACAACTTTACTGGGGAGGATGTG
GAGTAAGGGGAGTACATACTTGTACAGCCACTATGGAGATCACTGTGACA
GTCCCTCAGGAAGCTGCAAATAAATCTACCTCAAGATATACTTGCTTAAT
CATGTTCATTGCCTTTCTAGTCATAGTAGGCAGAACTTACAAACTACCCA
TATGCATATCACAAGATGGATAAAGAAAATGTACATTTTCACAATGCATT
ATTACTCAGCCCCTTAAGAATATGAAATCATGTATTCCCATCTAATTGGA
TGTAGCTAGAATACATCATACTCAGTGACAGGATCAAA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGATGCTGGAAGATTGTTTTA
GCAACAGAACATCCATTAAACATATAACCCACTGTATGCTTTTTGTTTGT
TTGCTTGTTTTTGTTTTTTTATTAGATATTTTCTTTATTTACATTTAAAC
CAGTGGCCAACTGTATTCTAAGGATCAGAAATTCATAAGGACAGGATGCC
TCAGTGGAAGACTGACAAGAGTTAGGGTGATGTTTTCAGTGATTTATATC
ACTGTCCACATTGTGCCATGGTTTGAAACAGAACACACACACACACACAC
ACACACATACACACTTTTTTTTACACACACCCCCCTACACACACACACAC
ACACACACACACAAATGCTGACCCACCCCTGAATAAATATATAAAAATGA
AGTATAGGAATTTATTTCTTAATTAGAGTTTTGAATAATAACAATGTATA
TGAAAATAGTAGTCTGTACTATAGTGATGGATCAAGGAAGCATAAATGCT
CTGCAGAAACACAAGTTGTAATCCACGTCTAAAACACTGATCAGACCATG
CAGACAATGGCTCACTGGCCTATGAGGCACTTCTTTCTAGCCAGTGACTC
AAAAAGCCAACTTGATTTCTACTTGTCATCTTGCCATCTTCTGGGACATT
GAGTTATTTTGGTCCCAGTTGGCAAACCAATAAGAATGCGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_d19.g1 MSMg01no193_d19.g1 CHROMAT_FILE:
MSMg01no193_d19.g1 PHD_FILE: MSMg01no193_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:33 2005
         (287 letters)



>mm_chr8_58196522_58197208
          Length = 687

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagatgctggaagattgttttagcaacagaacatccattaaacatataacccactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tttagatgctggaagattgttttagcaacagaacatccattaaacatataacccactgta 511

                                                                       
Query: 61  tgctttttgtttgtttgcttgtttttgtttttttattagatattttctttatttacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgctttttgtttgtttgcttgtttttgtttttttattagatattttctttatttacattt 451

                                                                       
Query: 121 aaaccagtggccaactgtattctaaggatcagaaattcataaggacaggatgcctcagtg 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaaccagtagccaactgtattctaaggatcagaaattcataaggacaggatgcctcagtg 391

                                                                       
Query: 181 gaagactgacaagagttagggtgatgttttcagtgatttatatcactgtccacattgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 390 gaagactgacaagagttagggtgatgttttcagtgatttatatcactttccacattgtgc 331

                                                          
Query: 241 catggtttgaaacagaacacacacacacacacacacacacatacaca 287
           | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 330 cgtggtttgaaacagaacacacacacacacacacacacacacacaca 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)