BAC Information

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BAC

Clone NameMSMg01-193O13
Chromosome8 (Build37)
Map Location 79,345,393 - 79,345,653
singlet/doubletsinglet
Overlap geneLOC100039211
Upstream gene1700007B14Rik, LOC100039185, EG631594, LOC666226
Downstream geneLOC384847, Nr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193O13.T7 (MSMg01no193_o13.b1)MSMg01-193O13.TJ (MSMg01no193_o13.g1)
ACCAG383027AG383028
length1,3681,338
length of high quality
(start - end)
264 (134 - 397)76 (138 - 213)
definitionCHROMAT_FILE: MSMg01no193_o13.b1 PHD_FILE: MSMg01no193_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:36 2005CHROMAT_FILE: MSMg01no193_o13.g1 PHD_FILE: MSMg01no193_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTACGCATTGGCGCTATAGACTCCTAAGGGAGAGATCCGCGGAATTCC
TGGCCTCTTCTGGTTTATATGGATACCACATACACATGAAGCACATACAT
ACATATAAGCGAAAGCCTCACATTCATAAAATAAAAGTAAATTAGTCTTT
AAAATGAAAATACACAATAATTTTGCCCTGTCCCAAGCAAAAGATATTTA
CATAATATATAACCCAGAGGTCTCAGTTAAGAAAACATATCCTCTAGCTG
CCAAGCATATGTTTACATTCAAACACAACATCACTCAAATCCCATGGAGT
CATAAAGAGGCACCCACAATAACATTGAACATTCAGAGCTGAGCTCTAAA
GAAATACTGGTGACCTATTTCTGTATTAGTACTTGGATTTATCTTTTATT
AATAACACATGATAATGAAATCTGTAGGCTGTATTCTGGAAGATTTTTTT
TTTCTCCCCCCCCCACANGNCTCCCTCCCCCCCAAAAAAAAAAGGGGGGG
GGTTTTTTTTTTTTTTNCTTTTTGTTTGTGCTTCTGCCCTTGCCTCCTCT
CCGTGCTGCCTGTCTCTCGTGTTTGCCCCTGTCGTTTTTTCCCCTTCCGC
TTTCTCGTCTCGTGTGTGCCCTTCCCTTGTTCTTCTCTCTGTCTTTTTGG
CCTTTTTCTCTTGCGCTCCTTCCCCTTCCTTGCTCTCTCGTCTCCCCGTT
CCTTCGTTCCGTCTCTTTCCCTCTCCTTCTGTTCTTTCTTTCTGTTTTTC
TCTTTCCTTCTTCCTCTCTTCCTTTTTGCCTCGCTCTCGCTCTCTTTCTT
TCTTTTTTTTTTCCCTCTTTCTTCTTGCCTCTTTCTTTCCTCTTTCTTTC
TTCTCTCTTCTCTCCTCTCTTCCTTTCCTCTTTTTTTCCCTGCTCTTTCT
CCCTCTCCCTCCCTTCTCCCCTCTCTCCTGCTCCCCTTCCTCTCTCTCTT
CTCTCCTCTCTCTCCTTTTCCTCTCCGTTTTCCCTCTCCTTTTCTTTTTC
CTCTTCTCTCTTCTTCCTCTCTCCTCTCTCTGTCTCCTCCNCTCTCTCTC
CTTCTTTCTTCTCTTCCTCTTTTTCTCGCTCTCTCTTTCTTCCCCTCTTT
CTCTCTCTGCTTTCCCCTTTCTCTCTCTTTCCCTCTTTCCCTCCCTCTTT
CTCCTCTTCTCTTTCTTCCTTTCCTGTCCTTCTGTCTCCTGTTTCTTCCT
CTTTTCTCTTCTTTCTCTCCTTCTCTCTCTCCTCCCCTCTCTTCTCTCCT
CTTTCTCTCCTTTCCTCCTCTCCCTTCTTTCTCCGCTCTCCCTCTCCTTC
CCTCCCTCTCTCTTCTCTTCTCTCCCTCTTCTTCCTTCTCCTTTTTCCCT
CTCTCTTTTCTTCTCCTC
NNCCGTTGACGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATGATTCTCAGACAAAAGCCTGCCAAAAAG
GGATTTCAGGTTGGGCCCCAATGCCCCACTGTATAAAAATTGCAACATTC
AGGGAAGGAAGTAGAAGGGAAGGTAAGCAGGTATTTATGGGGATGAGGGA
GAAGTGATGTATGTCACCACCCGGGTTGGACCCCCCTACTAACACACCTG
GCCGCATGGTTGAGGTCTTCTTCCTCCTGTCCCGAAAGAAGGCGTCTCCA
TCCTCATTGCTGCTGCTCTCTGTTTGTCCTGCCACCCCCCACCTGCATTG
CCCTCTTTTCCCTCCTCCGTCTCCCCTCCGTCCCCCCCCCACGCTTTTTT
TTTTTTTCCCCCCCCCCCCCTCCCTCTTCCTTCTGGGGTTGAAAGAACCT
TTTTTTTTTTTCCCCCCCCCCCCAAAAAACCCCCTCCCCCCCCAAAAAAA
GGGGGGGGGGTTTTTTTTTTTTTTTTTTTTTNNTTNTTTTTTTTTCCTTT
TTTTCCTCTCTCCTCTCCTTCTTTTCCCCTCCTCCCTCCTTCCCTCCCTT
CTCCTTCTCCTCCCCTTTCCCTCTCTTCCCCCCTCCCCCCTCTCCCTCCC
TTCCTCCTCCTCCCCCCCCTCTCCCTCTTCCCTCTCTTCTCCCCCCCCCT
CTCCCCCTTCTCCTCCCCTCTCTCCCTCTCCCTCCTTTTCTCCTTCCCTC
CTTCCCCTCCTCTCTNTCCCCCCTTCCTCTCCTCCCTTTTTTCTTCCCTC
CCCTCTTCTCTCCTTTCTCTCCCCTCCCCTCCTCTTCTTCCTCTTTNCTC
CTCCCCCTTTTCCCCCTCCCCCCCTCCCTCCCTCTTCTCTCTTCCTCCCC
CTCCCCCCCCCTCTCTCCTCCCCCTTCCCTCTCTTTTCTTCCCCTCTCCT
TCCCCTCCCCTTCTTTTCCTCTCCCTCCTCTCCTCCTTCCTTTCCCCCCC
CTCTCTCCCCTTCCTTNCCCCCCCCCCCCCCTCCCTCCCCCTTCCCNCCC
TCTTTCTCCTTCCCTTTCCCTCTCCTCTTTCCCTCCTNCCTTCCTTCCCT
CTTTCTTCTTCTCCTTCTTCTCCCCCTTTTCCTCCCTTCTCCTTCCTCTT
CTCCTCTTCTCCCTTCCCTCCTCTCCCCCCTTCTCTCCCCTTCTCTCCCT
TCCTCCCTCCCTCCCCTCTCTCCCCCTCTTCCCCTNTCTTTCTCCTCTCT
CCTTCTCCCTCTCCTCTCTCTCCTTNCCCTCCCTCTCCTCTCTCCCCCTT
CTTTCCTCTTTCCTCTTCCTCCCTCTTCCCCCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_o13.b1 MSMg01no193_o13.b1 CHROMAT_FILE:
MSMg01no193_o13.b1 PHD_FILE: MSMg01no193_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:36 2005
         (264 letters)



>mm_chr8_79345193_79345856
          Length = 664

 Score =  451 bits (233), Expect = e-131
 Identities = 254/261 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagtaaattagtctttaaaatgaaaatacacaataattttgccctgtcccaagcaaaag 60
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||
Sbjct: 201 aaagtaaattagtctttaaaatgaaaatacacaataattttgtcctgtcccaagccttag 260

                                                                       
Query: 61  atatttacataatatataacccagaggtctcagttaagaaaacatatcctctagctgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatttacataatatataacccagaggtctcagttaagaaaacatatcctctagctgcca 320

                                                                       
Query: 121 agcatatgtttacattcaaacacaacatcactcaaatcccatggagtcataaagaggcac 180
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 321 agcatatgtttacattcaaacacaacatcactcagctcccatggagtcataaagaggcac 380

                                                                       
Query: 181 ccacaataacattgaacattcagagctgagctctaaagaaatactggtgacctatttctg 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacagtaacattgaacattcagagctgagctctaaagaaatactggtgacctatttctg 440

                                
Query: 241 tattagtacttggatttatct 261
           |||||||||||||||||||||
Sbjct: 441 tattagtacttggatttatct 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)