Query= MSMg01no194_h24.b1 MSMg01no194_h24.b1 CHROMAT_FILE:
MSMg01no194_h24.b1 PHD_FILE: MSMg01no194_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:23 2005
(490 letters)
>mm_chr8_23360727_23361616
Length = 890
Score = 605 bits (313), Expect = e-177
Identities = 406/471 (86%), Gaps = 54/471 (11%)
Strand = Plus / Minus
Query: 4 ggaattctggaaggctaccacagaataggagagaaaaatcacctgaaaagatatgtctta 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ggaattctggaaggctacgacagaataggagagaaaaatcacctgaaaagatatgtctta 468
Query: 64 agactatccaaaattaaccaagatactagaggataaattcaggatgttcaaaagagatca 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agactatccaaaattaacaaagatactagaggataaattcaggatgttcaaaagagatca 408
Query: 124 agttggcaaacattcaaaaagaaaagaaaaagcaaaatagagaaacatgggtcactaagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agttggcaaacattcaaaaagaaaagaaaaagcaaaatagagaaacatgggtcactaagt 348
Query: 184 aggcttaatggataaaggtgctggtcgagaaaactggaagcccgaattccaacccccaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aggcttaatggataaaggtgctggtcgagaaaactggaagcccgaattccaacccccaaa 288
Query: 244 ctggagtaaaggtagaaggagagaaaagacttccaggatcatacacaagggtccaggcaa 303
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 287 ctggggtaaaggtagaaggagagaacagacttccaggatcatacacaagggtccaggcaa 228
Query: 304 ttacacacacactctctctctctc------------------------------------ 327
||||||||||||||||||||||||
Sbjct: 227 ttacacacacactctctctctctcatatgtatgtgtgtgtatatatatatatatatatat 168
Query: 328 ---------------tctcacacatatatatatgagatg--gctctctctctcttgtgat 370
| | | | |||||||||||||||| ||||||||||||| |||||
Sbjct: 167 atatatatatatatatat-atatatatatatatgagatggcgctctctctctctcgtgat 109
Query: 371 atatgtgtgtgtgtgtatatatatatatatgtatatatatatatatatata 421
|||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 108 atatgtgtgtgtgtgtgtatatatatatatatatatatatatgtatatata 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 106
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_h24.g1 MSMg01no194_h24.g1 CHROMAT_FILE:
MSMg01no194_h24.g1 PHD_FILE: MSMg01no194_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:23 2005
(289 letters)
>mm_chr8_23235701_23236390
Length = 690
Score = 501 bits (259), Expect = e-146
Identities = 283/291 (97%), Gaps = 2/291 (0%)
Strand = Plus / Plus
Query: 1 tatgaacagcatttttttttt-aaagcctcggacctgttttctgggtggccttttgcgca 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgaacagcatttttttttttaaagcctcggacctgttttctgggtggccttttgcgca 260
Query: 60 cggagttaggggcaactttcctaaggtccccagcatgctaagcagtgttcagctgtaaca 119
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 cggagttaggggcaactttcctaaggtccccagcatgctaagcagtgtacagctgtaaca 320
Query: 120 tactcccaggaggaagcatgtttctcatgcaaggtcttttttttttc-cttaaagaatta 178
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tactcccaggaggaagcatgtttctcatgcaaggtcttttttttttttcttaaagaatta 380
Query: 179 cttattttacataaatgagtacactgttgctgtcttcagacacaccagaagagggcatca 238
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaattttacataaatgagcacactgttgctgtcttcagacacaccagaagagggcatca 440
Query: 239 gatcccattacagatggttgtgagccaccatgtggttgctgggaattgaac 289
|||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gatctcattacagatggttgtgagacaccatgtggttgctgggaattgaac 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space: 190680
Effective search space used: 190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
