BAC Information

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BAC

Clone NameMSMg01-195E05
Chromosome8 (Build37)
Map Location 67,262,602 - 67,262,886
singlet/doubletsinglet
Overlap genenone
Upstream geneEG244495, Tll1, LOC100040989, Cpe, Sc4mol, Klhl2
Downstream geneLOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195E05.T7 (MSMg01no195_e05.b1)MSMg01-195E05.TJ (MSMg01no195_e05.g1)
ACCAG383856AG383857
length754730
length of high quality
(start - end)
44 (46 - 89)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no195_e05.b1 PHD_FILE: MSMg01no195_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:26 2005CHROMAT_FILE: MSMg01no195_e05.g1 PHD_FILE: MSMg01no195_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGGCCCTGCTTCAGATCACTGGGGGTGGGGTTTTGCTGTGCTC
TAGAGCCTCTACAGTCAATGTGAACTTTAGACTCGTCGCGTXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACAAAAAAAAAACATCTCCCTCGGGGGCGGT
ATCACTGTTATCCCCATAATCCTTAGATAACGCACCCAATAACATTTTAT
CAGACTTCCAACAAAATACACAGTAACCTTCAAACGGACCTCTTTCCCCC
CCGTTCATCCTTAAGTCCCACCCCACCGATCATGATCCCTATTACCCCTT
CCTTAACATGTTAATATTGTCTAACCCCCATCAGTATTATTTTTCACAAA
TTTCTCTTGTCTCCTCCAATTCAGCCTCCCCTCGCTTTACTACTCACACA
TCTCTAAGCCCTTCTTCTCTATACCCGAAAAATCTTCCCCCCATCTCTAT
TCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGGGTAGCCCACTATGGTTCCAG
GGACCCAACACTTTTCTGGCCTCTGTGGACACTCATGTAGGCACGTGCAC
ATGCCATGTCCGCACACATGCACACTCGCACACATGCGTGCACAAAATCC
TTGAAACTTAAAACAATGTTGTGGACCGATGTGGCTCAATGGTTTACTGA
ATTAAAAAACTGGATACAAAGTTGGGAGGGCCTAGGAAGTGGGGATGGAT
CTACGAGGTAGTTAGGCACAATATATGAAATATGGTCAAGATACACTGTA
TGAAGTTCTCTTTATTCCTTCCAAGCCATTACCCTAAAAATATAAACTAG
CAGGAGTGCAACTAAAGGTTACTTCAATAAAAATGAATTATAAGTCCATT
TAAGCAAGATTAAGCCATGGTAGAGAAAGAAATTTAAAAATTTATTAGGA
TTCATAATTCTGAACATGGCAGAATCCTGAAATGGCATGTATTTTGGAAA
AGGCTAATTTCTGAGACAAAATTTCCTGTCTCATGCTTTCAGTATTCAGT
GTGAATTTTCCATGCCAATAAAAGGGCACATGAGCTGTCATAACTCTTGG
GGCTTATCCTTCTTCTGTGTCAGGAAAAAGGAAGAAACCCCCCCCATTGA
ACAAGGTTGCTTCCCTTCCCCTAATGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_e05.g1 MSMg01no195_e05.g1 CHROMAT_FILE:
MSMg01no195_e05.g1 PHD_FILE: MSMg01no195_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:26 2005
         (286 letters)



>mm_chr8_67262402_67263087
          Length = 686

 Score =  505 bits (261), Expect = e-147
 Identities = 279/285 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgggtagcccactatggttccagggacccaacacttttctggcctctgtggacactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgggtagcccactatggttccagggacccaacacttttctggcctctgtggacactca 260

                                                                       
Query: 61  tgtaggcacgtgcacatgccatgtccgcacacatgcacactcgcacacatgcgtgcacaa 120
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 261 tgtaggcacgtgcacatgccatgtccacacacatgcacactcgaacacatgcgtgcacaa 320

                                                                       
Query: 121 aatccttgaaacttaaaacaatgttgtggaccgatgtggctcaatggtttactgaattaa 180
           |||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||
Sbjct: 321 aatccttgaaacttaaaacaatgttgtggaccaatgcagctcaatggtttactgaattaa 380

                                                                       
Query: 181 aaaactggatacaaagttgggagggcctaggaagtggggatggatctacgaggtagttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaactggatacaaagttgggagggcctaggaagtggggatggatctacgaggtagttag 440

                                                        
Query: 241 gcacaatatatgaaatatggtcaagatacactgtatgaagttctc 285
           |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacaatataggaaatatggtcaagatacactgtatgaagttctc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)