Query= MSMg01no195_m13.b1 MSMg01no195_m13.b1 CHROMAT_FILE:
MSMg01no195_m13.b1 PHD_FILE: MSMg01no195_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:06 2005
(319 letters)
>mm_chr8_54191614_54192331
Length = 718
Score = 561 bits (290), Expect = e-164
Identities = 305/310 (98%), Gaps = 1/310 (0%)
Strand = Plus / Minus
Query: 9 tctgtattttgcccactagcaaacagaagccttatttattcacatttccacaaataccat 68
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tctgta-ttagcccactagcaaacagaagccttatttattcacatttccacaaataccat 459
Query: 69 cggcaccactgttaatttcctaaatcataaagtttaatttaataaatccagatatattca 128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tggcaccactgttaatttcctaaatcataaagtttaatttaataaatccagatatattca 399
Query: 129 cttcagtcaccctattaaagtaggctttctctaaagtagaattaagaataggtattatgc 188
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 398 cttcagtcaccctattaaagtaggctttctctaaagtagaattaggaataggtattatgc 339
Query: 189 atatatagtttagttgtagtactgcaaacataagcatactagtacattttatttggtgaa 248
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 338 atatatagtttagttgtagtactgcaaacataagcatactagtacaatttatttggtgaa 279
Query: 249 atattagggtgagtttactgaagagggatagttacaaccttcttcattctgtgtacatat 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atattagggtgagtttactgaagagggatagttacaaccttcttcattctgtgtacatat 219
Query: 309 accctcctgt 318
||||||||||
Sbjct: 218 accctcctgt 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space: 219790
Effective search space used: 219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_m13.g1 MSMg01no195_m13.g1 CHROMAT_FILE:
MSMg01no195_m13.g1 PHD_FILE: MSMg01no195_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:06 2005
(285 letters)
>mm_chr8_54078860_54079544
Length = 685
Score = 543 bits (281), Expect = e-159
Identities = 284/285 (99%)
Strand = Plus / Plus
Query: 1 tctttgatttgcaatgggcattcctaggcttcctgaagctgtgtagaattatttttatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttgatttgcaatgggcattcctaggcttcctgaagctgtgtagaattatttttatcc 260
Query: 61 aaacccttatgaacattgctttctgcactaaattattgtaggtgttttgtaaaagaactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacccttatgaacattgctttctgcactaaattattgtaggtgttttgtaaaagaactc 320
Query: 121 ttttttttaacacgaaatttttaaagtttttcttaagctcacttgctttgtaagttgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttttaacacgaaatttttaaagtttttcttaagctcacttgctttgtaagttgagg 380
Query: 181 gctaccacatataataaattatatttactataataaatgtaatataatgtcttcctgcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaccacatataataaattatatttactataataaatgtaatataatgtcttcctgcta 440
Query: 241 aaatacctcttataatactcctgggggttatatattatttaactt 285
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatacctcatataatactcctgggggttatatattatttaactt 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
