Query= MSMg01no195_p19.b1 MSMg01no195_p19.b1 CHROMAT_FILE:
MSMg01no195_p19.b1 PHD_FILE: MSMg01no195_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:22 2005
(674 letters)
>mm_chr8_108943320_108944393
Length = 1074
Score = 1268 bits (656), Expect = 0.0
Identities = 667/674 (98%), Gaps = 7/674 (1%)
Strand = Plus / Plus
Query: 5 gaattctgctccta----tcctcagtgtagacagggctacagcttatggagagagacttc 60
|||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgctcctagaaatc---agtgtagacagggctacagcttatggagagagacttc 260
Query: 61 ttctaactagaggcgtgggagctgtctgacctgaaaaggaagccgaagccattcctgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctaactagaggcgtgggagctgtctgacctgaaaaggaagccgaagccattcctgggg 320
Query: 121 ctgtctctcttctccagtcaggtgttcctgctggaaataagtcttatggggaaaacatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtctctcttctccagtcaggtgttcctgctggaaataagtcttatggggaaaacatag 380
Query: 181 acaagtgctgaattacaggcatgtaataccgcacccagctttatactgtcatcagagatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaagtgctgaattacaggcatgtaataccgcacccagctttatactgtcatcagagatt 440
Query: 241 ggttaaccctttaatgccagcattcagaaggcagaggcaggtggctctctgtgagctcga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttaaccctttaatgccagcattcagaaggcagaggcaggtggctctctgtgagctcga 500
Query: 301 ggccagcctccgctacaatagtgagacctggctggtctctaaagaaagtgaagacaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccagcctccgctacaatagtgagacctggctggtctctaaagaaagtgaagacaaaac 560
Query: 361 acagggcgaggctggtgtaaggtgaaccttagtccgagcctcacaacaccgtgtcccaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acagggcgaggctggtgtaaggtgaaccttagtccgagcctcacaacaccgtgtcccaag 620
Query: 421 cacacagtccccaggagtcaacactgccgtcactattgaaaaagaagcatgttagaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacacagtccccaggagtcaacactgccgtcactattgaaaaagaagcatgttagaattt 680
Query: 481 tgacaaagccaacttttcagagactgtgttttcatttttaactcacagagcgagcttagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgacaaagccaacttttcagagactgtgttttcatttttaactcacagagcgagcttagt 740
Query: 541 ttgtgatgaggcttctgaccagcctgagtgcattgtgtttggtaaacgtacactccacag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtgatgaggcttctgaccagcctgagtgcattgtgtttggtaaacgtacactccacag 800
Query: 601 taaatctatgcagtacacacttcggggagaggtctgttttaggcctttagcaatggaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaatctatgcagtacacacttcggggagaggtctgttttaggcctttagcaatggaaaa 860
Query: 661 agaaacaaaactaa 674
||||||||||||||
Sbjct: 861 agaaacaaaactaa 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_p19.g1 MSMg01no195_p19.g1 CHROMAT_FILE:
MSMg01no195_p19.g1 PHD_FILE: MSMg01no195_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:22 2005
(571 letters)
>mm_chr8_109086110_109087079
Length = 970
Score = 830 bits (429), Expect = 0.0
Identities = 463/485 (95%), Gaps = 19/485 (3%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaaaccctgtctcaaaaaaccaaaaaagaaaaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 caggacagccagggctacacagagaaaccctgtctcaaaaaaccaaaaaagaaaaaaaaa 420
Query: 61 aaaaaaagaaatagagaaccacggtcacgtgggcagccctgccttcatgcaggacctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaaaaaagaaatagagaaccacggtcacgtgggcagccctgccttcatgcaggacctgaa 360
Query: 121 taacatctgaaggatatttttgtcccgtgtgcctgcactttggctccagctgtaaccact 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 359 taacatctgaaggatatttttgtcccgtgtgcctgcactttggctccagctgtaacttct 300
Query: 181 ggcagggtaaggtgtgaccttgtgaatattggtcaagtgttctaccttggag-------- 232
||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 299 ggcagggtaaggtgtgaccttgtga-tattggtcaagtgttctaccttggagtgtagtcc 241
Query: 233 -----gcacctcagttggatgctgttctttagtaaccaccaacctttgtttgcttgcttg 287
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 240 aggaggcacctcagttggatgctgttctttagtaaccaccaacctttgtttgtttgcttg 181
Query: 288 tttggctggttggttgggttttgtttttttgagacagagtctctctatgtagttctggct 347
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 180 tttggctggttggttgggtttt-----tttgagacagagtctctctatgtagttctggct 126
Query: 348 gtcctggaactggctatgtagcccaggctggtctagaactcagagagttctgcctgtctc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gtcctggaactggctatgtagcccaggctggtctagaactcagagagttctgcctgtctc 66
Query: 408 tgccccctggatgtcagcattaagtgcatttactgtcgtgtctggcagaggtttgaatct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tgccccctggatgtcagcattaagtgcatttactgtcgtgtctggcagaggtttgaatct 6
Query: 468 cagga 472
|||||
Sbjct: 5 cagga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space: 538560
Effective search space used: 538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
