BAC Information

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BAC

Clone NameMSMg01-196I22
Chromosome8 (Build37)
Map Location 4,022,356 - 4,022,712
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905
Downstream geneLOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196I22.T7 (MSMg01no196_i22.b1)MSMg01-196I22.TJ (MSMg01no196_i22.g1)
ACCAG384629AG384630
length780739
length of high quality
(start - end)		361 (46 - 406)361 (82 - 442)
definitionCHROMAT_FILE: MSMg01no196_i22.b1 PHD_FILE: MSMg01no196_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:08 2005CHROMAT_FILE: MSMg01no196_i22.g1 PHD_FILE: MSMg01no196_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGCTGTTCATACTTTCTTAATGCCTTCCCTAGTCTATTCCTAG
ACATTGTCTCTGTAAACCCTTTAAGTGCCTGCTAGATTTAGCTTTATGAA
AAATAACATATCTGTTTAAAGAAAACTGTAGTAAGTTGGTACAATGGTTA
TGATAAATTTCAATGCTTCAGTTAGGAGGATAAAGGAGACATATAGTGTA
GGTAAAAATGGTTCAGTCAGGAGTTAGGCTTACTGCTCATGCTCTCCTTA
TACCCCCTTCCTCTCCTAATTAAGACACTGGCATATTTGAGCTCTTTGAG
ATGAAGCTTAGATGGGGGGTGGCCCTGCCTGTTCCAGGAATCTAAATGTT
TGACACATCTGACCCCCCCCCACCACCTGTCATCTCTTAAATACTAGATC
CGACTGACACACTTTTCTACTGATATGGCAAAGTAACCATGACCATACCT
TATATGTGCGAAAGGATTTATTCCTGGTTTTTGCGTTTCCACGACATTTA
TACTCTTTGCCCCCCTTATTTTCTACCCCCTCATCTTCTCTTCACTCTTC
TCATCTTTCCTTCATACCGCCCTTATGTATCATATCTCTTCTCTCTCCCC
TACATGATCTCTCACCCTTTCTACCCCATTTCCCAATTTCTTATCATTCT
CCCCAATCCGCCTTACCTATCTCTCTCCTCCCTTCTATTTCTCTCCTCCT
CTCCCTCTATTCTCTTACTCCGTTCTTCTT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAAATCTCCCTCTTCTAT
TCCTATTGTTCTTAGGTTTGGTCTCTTTATAGGTTCCTTGATTTCCTGAA
CATTTTGTGTCAGGACCTTTTTAGATATAACATTTTTTAAATGCCATATT
AGTTTCTTCTATCTTATCTTCTATGCCTGATATCCTTTTCCATCTCTTGT
ATTCTGTTAGTGATACTTCTGTCTGTAGGTTCTGTTAACTTACCTAGATT
TTCCATTTCCAGTATTCCATCAGTTTGTATTTCATTTATTCGTCTATTTC
TATTTTCACATCTTAAACACATTCCTTTATCTGTTTGCCTCCCTTACTCT
CACCACTGATTTGTTCAAGGTTTTTTTTTTTTTTGTATTTCTTCCCTAAA
GGTCTCCATTATCTTCATAACATTGCATTTAAGGTAATCCTTTTGTGCTT
CCCTTGTGTCCTAAAAACTCCGTGCTTTCTTGCTCCATGCTTCATCCGCC
GCCGTTGTTATTTTTATCTTTATTTTTCTTCGTTCCTCTTCTTCACGGCC
CCTTTATCTTCCCCTCATTTCCTTCTGTATTCCTTCCTCTTTCTGTATCC
TTTTACCTTTTTCCCTCTATCCCCTATATTCCCTTTTCCCCTCTTACTTA
CACCCATTTTTCCCTTTCTATTTCCCTTTTTCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_i22.b1 MSMg01no196_i22.b1 CHROMAT_FILE:
MSMg01no196_i22.b1 PHD_FILE: MSMg01no196_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:08 2005
         (361 letters)



>mm_chr8_4022152_4022912
          Length = 761

 Score =  690 bits (357), Expect = 0.0
 Identities = 357/357 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgctgttcatactttcttaatgccttccctagtctattcctagacattgtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaattcactgctgttcatactttcttaatgccttccctagtctattcctagacattgtct 502

                                                                       
Query: 65  ctgtaaaccctttaagtgcctgctagatttagctttatgaaaaataacatatctgtttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtaaaccctttaagtgcctgctagatttagctttatgaaaaataacatatctgtttaa 442

                                                                       
Query: 125 agaaaactgtagtaagttggtacaatggttatgataaatttcaatgcttcagttaggagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaactgtagtaagttggtacaatggttatgataaatttcaatgcttcagttaggagg 382

                                                                       
Query: 185 ataaaggagacatatagtgtaggtaaaaatggttcagtcaggagttaggcttactgctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaaggagacatatagtgtaggtaaaaatggttcagtcaggagttaggcttactgctca 322

                                                                       
Query: 245 tgctctccttatacccccttcctctcctaattaagacactggcatatttgagctctttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctctccttatacccccttcctctcctaattaagacactggcatatttgagctctttga 262

                                                                    
Query: 305 gatgaagcttagatggggggtggccctgcctgttccaggaatctaaatgtttgacac 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgaagcttagatggggggtggccctgcctgttccaggaatctaaatgtttgacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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