BAC Information

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BAC

Clone NameMSMg01-196O03
Chromosome8 (Build37)
Map Location 101,479,547 - 101,479,964
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196O03.T7 (MSMg01no196_o03.b1)MSMg01-196O03.TJ (MSMg01no196_o03.g1)
ACCAG384823AG384824
length743823
length of high quality
(start - end)
426 (55 - 480)146 (81 - 226)
definitionCHROMAT_FILE: MSMg01no196_o03.b1 PHD_FILE: MSMg01no196_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:34 2005CHROMAT_FILE: MSMg01no196_o03.g1 PHD_FILE: MSMg01no196_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAAAAATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTTCTGAGCTCTGAATTGTGCCCTGAATATAAAAAT
CTGCCAGAACAGGTGACATGTTGCCAAGGGTTCCAGAGAGCAGACAGAAG
AAATTGCGGATCTGCCAACAATTTATTTCCAAAGACAGAGAAAAATGGTG
ACGTAGCAATGTCATGAAATAATGCAGAAAGCTTTTTTATTTCCCTTCCG
CCTGAAGAATGCTAATCCAGACTATAGTTTTATTATCTGAGCCACGGGAA
AAGACAAAATGCAATAATTAAGAAATCGAAAGACTGTCATAAAAGACAAT
GTGAAGCTGGAAGCTGAACAATTATTTAAAGTGCTCAAAAAGCCCTGCTC
AGAACTTCACTGTTCTAAGTTTTTGGAGGAAAATGAATGGCTACCTCAAG
AAGGATTGGATACTCTAAGCTCTGACCAACAAATATAGGGCCATAATGAC
ACTTATTTATTCATTCATCACACATATACTGATACGTATGCAATATGCCA
TCCAATGCCAAGTCTATGACCATGGGCACATGAAGTAAGGCTCATTCCTC
TGTACTCATCAATTGCCCGAGCTTATTGTGCTACTGGGAACTCAATGAAA
AAGTACTGTTGCCCATCGTCCGCACAACCTTTCCTGCATTATCGATTAGC
CCGTACCACCGTTTCCATTTTCCTGCCTTTCGGCGTTTCACTG
NTTTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACTGCTTTTAGCAGTCAA
ACTTCTTTTCATGAGTTAAATTATTCAGTCATATTTATGTTTTCTTTGTG
TGTGTCTCTGTCTGTTTCTGCCTCTGTTTCTGTCTCTGTGGTACTCTCTG
GTTTTGTGGTGAGTGTGTGTGTGTGTCTCCATCATCTTTCCAACTTTTCT
TCCTTTCTCATTTTTACTACCTTTTCATTATCAGTTTCAATACTTAATCA
TATTTTCTCCTTTTACCTTTCACTCAATTATTTTTCTCACTTACAATTCC
ATAATTTACATTTTACACATTTTTATTTTTTTCCTTCCCTCCTTCCCTTT
TTTTTTTTTTTCCTTTTCCTTTCCTTTTTTCCCCTCTTCCTTAATTATTT
ACTTCTTTTACACTTTCCTATTTTCTTTTCTTACCCCCCTTTTCTTCACT
TTTATTACCTTTTTTTTTACTAACTACTTATTTTCATTATTTTCACTTTT
CCTTCTTCCTCCCCTTTCCCTCCCTCCATTCTTACCACAATTATTCTTAT
ATTCTTTATTCACCCACCCCTCCCTTATTCCCCTTACCCTATTTTCCCTA
TTTTTACCCCCTTTTTTTCTTCAATATTATTCCCCTTTTCTTCCCCCCCT
TTTTTCCGCTTTTTTTCACCCATTCCACTTTCCCTTTTTTCCCTCTCACA
TTTCTCCTTTCCTCCATTTTTCCTCTTTCCCACTTTACTTCACTTTATTT
TTACACTTTTCCATATTCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_o03.b1 MSMg01no196_o03.b1 CHROMAT_FILE:
MSMg01no196_o03.b1 PHD_FILE: MSMg01no196_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:34 2005
         (426 letters)



>mm_chr8_101479343_101480168
          Length = 826

 Score =  793 bits (410), Expect = 0.0
 Identities = 416/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttctgagctctgaattgtgccctgaatataaaaatctgccagaacaggtgaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattctttctgagctctgaattgtgccctgaatataaaaatctgccagaacaggtgaca 563

                                                                       
Query: 65  tgttgccaagggttccagagagcagacagaagaaattgcggatctgccaacaatttattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgttgccaagggttccagagagcagacagaagaaattgcggatctgccaacaatttattt 503

                                                                       
Query: 125 ccaaagacagagaaaaatggtgacgtagcaatgtcatgaaataatgcagaaagctttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccaaagacagagaaaaatggtgacgtagcaatgtcatgaaataatgcagaaagctttttt 443

                                                                       
Query: 185 atttcccttccgcctgaagaatgctaatccagactatagttttattatctgagccacggg 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atttcccttctgcctgaagaatgctaatccagactatagttttattatctgagccacggg 383

                                                                       
Query: 245 aaaagacaaaatgcaataattaagaaatcgaaagactgtcataaaagacaatgtgaagct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaaagacaaaatgcaataattaagaaatcgaaagactgtcataaaagacaatgtgaagct 323

                                                                       
Query: 305 ggaagctgaacaattatttaaagtgctcaaaaagccctgctcagaacttcactgttctaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggaagctgaacaattatttaaagtgctcaaaaagccctgctcagaacttcactgttctaa 263

                                                                     
Query: 365 gtttttggaggaaaatgaatggctacctcaagaaggattggatactctaagctctgac 422
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 262 gtttttggaggaaaatgaatggttacctcaagaaggattggatactctaagctctgac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)