Query= MSMg01no196_o10.b1 MSMg01no196_o10.b1 CHROMAT_FILE:
MSMg01no196_o10.b1 PHD_FILE: MSMg01no196_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:36 2005
(502 letters)
>mm_chr8_78258640_78259540
Length = 901
Score = 940 bits (486), Expect = 0.0
Identities = 495/498 (99%), Gaps = 1/498 (0%)
Strand = Plus / Minus
Query: 5 gaattccaaggaataccaaatgtcttcactttagaaagaaatggaaaagtaaaatttgca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaattccaaggaataccaaatgtcttcactttagaaagaaatggaaaagtaaaatttgca 531
Query: 65 aaacatggtcctctaagtttagtgtccaagtgtgttattggattgatgatggggtgagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaacatggtcctctaagtttagtgtccaagtgtgttattggattgatgatggggtgagga 471
Query: 125 tttacataacaaagaaagagtaccaattattaggccaaacaataaaggagtaagaaatgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tttacataacaaagaaagagtaccaattattaggccaaacaataaaggagtaagaaatgt 411
Query: 185 cttcctgaatccatttgctttattaaagtttaactatttccctttattgttactaaacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cttcctgaatccatttgctttattaaagtttaactatttccctttattgttactaaacat 351
Query: 245 gtggaccaagaaattacttttaatatgtgtaaattctaggaagactattttcaaggttca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtggaccaagaaattacttttaatatgtgtaaattctaggaagactattttcaaggttca 291
Query: 305 catacaatctttaaaaactttctcatcactataaaaaaaaaataccagatgtaggcaact 364
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 290 catacaatctttaaaaactttctcatcactat-aaaaaaaaataccagatgtaggcaact 232
Query: 365 aaagagagcaaggaattattttggccctgtggtgattggttttaactctcaacttgatac 424
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 aaagagaggaaggaattattttggccctgtggtgattggttttaactctcaacttgatac 172
Query: 425 aaactagaaacaactgggaagagagcctcaactgagaaattatcaagatgagcaggacct 484
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 171 aaactagaaacaactgggaagagagcttcaactgagaaattatcaagatgagcaggacct 112
Query: 485 atgagcatgcctgtggga 502
||||||||||||||||||
Sbjct: 111 atgagcatgcctgtggga 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 901
Length adjustment: 10
Effective length of query: 492
Effective length of database: 891
Effective search space: 438372
Effective search space used: 438372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_o10.g1 MSMg01no196_o10.g1 CHROMAT_FILE:
MSMg01no196_o10.g1 PHD_FILE: MSMg01no196_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:36 2005
(344 letters)
>mm_chr8_78169139_78169882
Length = 744
Score = 636 bits (329), Expect = 0.0
Identities = 338/341 (99%)
Strand = Plus / Plus
Query: 1 tgattggcttctggaatttggctatacagtaattctctgaccctattttggagagactat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgattggcttctggaatttggctatacagtaattctctgaccctattttggagagactat 260
Query: 61 cataagcaaagatttctcaaactttgaatctccatatgtaagagttgccttgggtagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataagcaaagatttctcaaactttgaatctccatatgtaagagttgccttgggtagaaa 320
Query: 121 caaacaggaaggggaggaggaaaaacccatgtccaatccagtagggtagagtacagctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaggaaggggaggaggaaaaacccatgtccaatccagtagggtagagtacagctgc 380
Query: 181 cagagtgcagcctcattcttctggaattggggacaaagtggttgcttctgatgtcctctg 240
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 381 cagagtgcagcctcattcttctggaattagggacaatgtggttgcttctgatgtcctctg 440
Query: 241 aagctctggagggaaagaacgtactaagcttaggtaatgtaccaggtagtgtcctgtaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagctctggagggaaagaacgtactaagcttaggtaatgtaccaggtagtgtcctgtaat 500
Query: 301 tggatgacaacagcaggggtatgggggcggggaggagggag 341
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tggatgacaacagcaggggtatcggggcggggaggagggag 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
