BAC Information

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BAC

Clone NameMSMg01-197L11
Chromosome8 (Build37)
Map Location 13,961,188 - 14,046,302
singlet/doubletdoublet
Overlap gene2610019F03Rik, EG546036, Erich1
Upstream geneMcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103
Downstream geneDlgap2, LOC100041140, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197L11.T7 (MSMg01no197_l11.b1)MSMg01-197L11.TJ (MSMg01no197_l11.g1)
ACCAG385329AG385330
length690726
length of high quality
(start - end)		596 (46 - 641)558 (77 - 634)
definitionCHROMAT_FILE: MSMg01no197_l11.b1 PHD_FILE: MSMg01no197_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:42 2005CHROMAT_FILE: MSMg01no197_l11.g1 PHD_FILE: MSMg01no197_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,961,188 - 13,961,780)(14,045,745 - 14,046,302)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCCAATACAGACAGACAGATGAAGGGGTCACTGTCCATATACCT
CCAAAGGACGCCCTGGTCCCACAGCCACGAGCACGCCATACTTCCTCATG
TGGATGGGACTAAAGCTGCCCGGGACCACATCCTGCTGGGGTTCCTCCCA
ACTCTAGACTTTCCTATACAAGGCCCAAGGCTGGCTGGCATCTTGTCTGC
AAGGAGGGGATAGAAATGTGTCTTGCAGCTTTGTGGTAGCACAGTAAGAT
ACCTGCTGCCTAGGCATGTGCGGGGCATCCTCCTTCAAGCAGGACAGCCG
TGACTTTCATCAAAGTAGCCCTGACTAGGCAAGGGACCCTCAGACCAAGC
CTCTTAAGAGTGCACTCCTTCTCATGAGGAAGAGGGGCAGGAGCGTCCTT
GCAGGGACGCTCACTTGAGATCTTGGCCTCTCCGGACTGCACCTCCCACT
CAGCTCTCTGTGATTCTAACTGCACACAGCCTCAGACTCCCAAAGTGCTG
AAATATATAGAACATAGAGAGCTGTCTTAGGGATCTCACCTAGGCAGCTA
CAGGGAAGCCATCATCCATGCTGAGGCCACCGCTCTGGAGTCACCCATGC
CTCTAACTGAGCTCAATAAACTCACTGGCTCCCCAGGGAG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGGCCTGACCTCTTCCCAAAG
GCCCTGCCTCTTTGCATTGTCCTGGTAAGGGTTAAGTCTCAACACAGAAA
CTTTGGGGATACATTCACACCACTTGGAGTATCTTATATTTATAAGCCTA
TTTCTTTTTTTCTAAGTTTTGCTCTAACGTTTTACTAGAAAATTTTATGG
ATGGTGTTTATATGTTTTTGTAATGACATATGAAGGCTATAATGATTGCT
GTTATAGTAATTTTATATTTTGCACCAATACACAAGAACTAAGCAGGCAC
AGCGGTACCTACCTGTAATCCCAGCAGCACCCAGAAGAGAAAGTGGAGAG
GATCTCAAGTTCAACACTCCACAGAGTTGCATAGTACACACTGTGTCACA
GGAGGGGCGCCTGTGTTGGGGGCACTGTGAGGAACGAGGGTGTAAACCCA
GGACTTCACCGAGCAGCGTCACCCTAGGCCCTCGCTCACACTGTGAGTGT
CCCTATTTACCCCAGATTTGAAATTTAAAAGTCAAGGTCCAGTGATAATG
GTTTTTACCCTCCACAGGTTTTTTTTTTTCTGACTACATCTAGTGCCCCT
TTTTTATAATATTCTGAAATCTATTTCACACTCACACACGCCCCTTTCAC
CAGAGGCGCCTTCTTTTTTTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_l11.b1 MSMg01no197_l11.b1 CHROMAT_FILE:
MSMg01no197_l11.b1 PHD_FILE: MSMg01no197_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:42 2005
         (596 letters)



>mm_chr8_13960985_13961980
          Length = 996

 Score = 1100 bits (569), Expect = 0.0
 Identities = 587/593 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccccaatacagacagacagatgaaggggtcactgtccatatacctccaaagga 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccccaagacagacagacagatgaaggggtcactgtccatatacctccaaagga 263

                                                                       
Query: 64  cgccctggtcccacagccacgagcacgccatacttcctcatgtggatgggactaaagctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgccctggtcccacagccacgagcacgccatacttcctcatgtggatgggactaaagctg 323

                                                                       
Query: 124 cccgggaccacatcctgctggggttcctcccaactctagactttcctatacaaggcccaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccgggaccacatcctgctggggttcctcccaactctagactttcctatacaaggcccaa 383

                                                                       
Query: 184 ggctggctggcatcttgtctgcaaggaggggatagaaatgtgtcttgcagctttgtggta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggctggctggcatcttgtctgcaaggaggggatagaaatgtgtcttgcagctttgtggta 443

                                                                       
Query: 244 gcacagtaagatacctgctgcctaggcatgtgcggggcatcctccttcaagcaggacagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcacagtaagatacctgctgcctaggcatgtgcggggcatcctccttcaagcaggacagc 503

                                                                       
Query: 304 cgtgactttcatcaaagtagccctgactaggcaagggaccctcagaccaagcctcttaag 363
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgtgactttcatcaaagcagccctgactaggcaagggaccctcagaccaagcctcttaag 563

                                                                       
Query: 364 agtgcactccttctcatgaggaagaggggcaggagcgtccttgcagggacgctcacttga 423
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtggactccttctcatgaggaagaggggcaggagcgtccttgcagggacgctcacttga 623

                                                                       
Query: 424 gatcttggcctctccggactgcacctcccactcagctctctgtgattctaactgcacaca 483
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 624 gatcttggcctctccggcctgcacctcccactcagctctctgtgattctaactgtacaca 683

                                                                       
Query: 484 gcctcagactcccaaagtgctgaaatatatagaacatagagagctgtcttagggatctca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcctcagactcccaaagtgctgaaatatatagaacatagagagctgtcttagggatctca 743

                                                                
Query: 544 cctaggcagctacagggaagccatcatccatgctgaggccaccgctctggagt 596
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 744 cctaggcagctacagggaagccatcatccatgctgaggccgccgctctggagt 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no197_l11.g1 MSMg01no197_l11.g1 CHROMAT_FILE:
MSMg01no197_l11.g1 PHD_FILE: MSMg01no197_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:42 2005
         (558 letters)



>mm_chr8_14045449_14046406
          Length = 958

 Score = 1056 bits (546), Expect = 0.0
 Identities = 555/558 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctggcctgacctcttcccaaaggccctgcctctttgcattgtcctggtaagggttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tcctggcctgacctcttcccaaaggccctgcctctttgcattgtcctggtaagggttaag 795

                                                                       
Query: 61  tctcaacacagaaactttggggatacattcacaccacttggagtatcttatatttataag 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tctcaacacaaaaactttggggatacattcacaccacttggagtatcttatatttataag 735

                                                                       
Query: 121 cctatttctttttttctaagttttgctctaacgttttactagaaaattttatggatggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cctatttctttttttctaagttttgctctaacgttttactagaaaattttatggatggtg 675

                                                                       
Query: 181 tttatatgtttttgtaatgacatatgaaggctataatgattgctgttatagtaattttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tttatatgtttttgtaatgacatatgaaggctataatgattgctgttatagtaattttat 615

                                                                       
Query: 241 attttgcaccaatacacaagaactaagcaggcacagcggtacctacctgtaatcccagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 attttgcaccaatacacaagaactaagcaggcacagcggtacctacctgtaatcccagca 555

                                                                       
Query: 301 gcacccagaagagaaagtggagaggatctcaagttcaacactccacagagttgcatagta 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 554 gcacccagaagagaaagtggagaggatctcaagttcaagactccacagagttgcatagta 495

                                                                       
Query: 361 cacactgtgtcacaggaggggcgcctgtgttgggggcactgtgaggaacgagggtgtaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cacactgtgtcacaggaggggcgcctgtgttgggggcactgtgaggaacgagggtgtaaa 435

                                                                       
Query: 421 cccaggacttcaccgagcagcgtcaccctaggccctcgctcacactgtgagtgtccctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cccaggacttcaccgagcagcgtcaccctaggccctcgctcacactgtgagtgtccctat 375

                                                                       
Query: 481 ttaccccagatttgaaatttaaaagtcaaggtccagtgataatggtttttaccctccaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttaccccagatttgaaatttaaaagtcaaggtccagtgataatggtttttaccctccaca 315

                             
Query: 541 ggtttttttttttctgac 558
           || |||||||||||||||
Sbjct: 314 ggattttttttttctgac 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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