BAC Information

Click to search

BAC

Clone NameMSMg01-197M23
Chromosome8 (Build37)
Map Location 84,201,522 - 84,201,841
singlet/doubletsinglet
Overlap genenone
Upstream geneFrem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneInpp4b, LOC671182, Il15, EG666564
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197M23.T7 (MSMg01no197_m23.b1)MSMg01-197M23.TJ (MSMg01no197_m23.g1)
ACCAG385388AG385389
length6951,098
length of high quality
(start - end)
321 (375 - 695)---
definitionCHROMAT_FILE: MSMg01no197_m23.b1 PHD_FILE: MSMg01no197_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:49 2005CHROMAT_FILE: MSMg01no197_m23.g1 PHD_FILE: MSMg01no197_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATTCTTTCCAAGAAAACACAGTGAGGTTTGTAACAGTGACCTC
TCAGTTTTGGCTTCTGCCCCTGTTCGAGTTTCATTTTACTTTTGATGCTG
TTGCAAATAATCTAAGAAAAGCAAGGATTTTTGTTTTTGTTTGTTTTGAT
AATTTGGACTGAAATTAATTCCAGGTTACAGCCCATTATTGGTGGAAATC
AAGGCAGGAGTTTAAGCATCCTATTCACACTCTATAGTAGATAAAGAATA
AATAATCCTGTCTGTTTGCTCTTTTGTACTTGTACACATTTAACTTTCTT
CATTCTTTTTTTCCACGCCCCCACTCCACAAAATGTTGCCTTTCATATCC
ATCTGGATGTTTTCAGATCAATCAGAAATCAAGATGAGTCCCCCATAGGC
CAACATGACTTACATAACTCATCATTAAGATTCTTTCCCCTGGTGATTCT
AGGTAGGGTCTTGTTGACAGTCAAAATCAACCAACACAAAGTCTAAATAT
TCCTTTTAGTTCCTTCTAATCATTATTCAGTAACCATGTATGTTCATTTC
CTTTCCTGTTTTGATGAAAGGGAAGTTTGTTTTTTTCTAATAGTTTGGAG
GCATAGAGACCATCATGGTGGAAAGCTAAAGGATGGTGAGGTATC
AATTTTACGAAGAGGAAGATGGTACGTGATAATNTATATAAACAAAATAA
ATTATATATGGGAGAATTAAAAAAAAATTGGTGTGGGGGTGCCGAAATGG
ACGAAATGGTAATCCTGTTTNTTTNNCCNNNNNNNTTNNTTNNNTTTCCT
ATGATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGACTGAAAATGGATTATTATAGACTCG
AAGACACGTACATAAATTTTTTTCCCCCAATACATATGCGAGATATACTG
TATATATACATAAATATGATGTGTGCGTGGTATATATAAAGATACATAAT
ATAATTCGAAGTACTTGGACTTACTTTCCCAAGAACTAGTGTAGTATTGT
TTGACAGTGAATGAACGATGTTTGCATTAATACTTATTTTGATGTCAATG
ATTGTCATTCTTGATTTATGAAGGAGCCTGCTTTAGTGGCAATAGTGGAT
GCTTGATGTTTTTGTTATTATGCCGCGCAAGCTTAGTTGTAAAGTGGCAG
AGACATCTTTCTTTTTTTTATCACACGCCCGCCACTGGCTTTTATTTATT
GCAATAGATGCTGTACAAGAAACCTGCTTTAAGATCCTTGCATATTCAAG
AATAATAGCACTGCAATTAGGTAATATTGTTGTTTATTACAAGTGTACTC
ATAAGAAGTAGTAGTATTCTCCAATACAGTAGTTATTTGTCCAAGTCGTG
CCCGAGTTATTATTATTTATTTAGAAGTGTTTTGTAACTATTCACTTTAA
GTTCAGTGCAATGAGTAGAGCCCCAATGATACGAAGAAATTTATCTTGTA
TAAAATTTAGAGAATGTTTTAATAACCTCGTTTCCTTATATTGGCCGTTC
ATTATCGTAGATAAATAATTCAAATGATGATCGTGTTATCCCATCGTTCA
TGTGAGAAACGTATCTATATTGGTTTTAACGGCGGCCCGGCCAAACCAGA
ATAACAAATTATATGCTCCGCCGGTTTAATGTTGTTCATTATATTTTGAT
AATCAAGGTTACTATTTCGACAGTATTAATATCCACCTCTTTTGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_m23.b1 MSMg01no197_m23.b1 CHROMAT_FILE:
MSMg01no197_m23.b1 PHD_FILE: MSMg01no197_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:49 2005
         (321 letters)



>mm_chr8_84201322_84202041
          Length = 720

 Score =  613 bits (317), Expect = e-180
 Identities = 320/321 (99%), Gaps = 1/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccacaaaatgttgcctttcatatccatctggatgttttcagatcaatcagaaatcaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccacaaaatgttgcctttcatatccatctggatgttttcagatcaatcagaaatcaaga 260

                                                                       
Query: 61  tgagtcccccataggccaacatgacttacataactcatcattaagattctttcccctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtcccccataggccaacatgacttacataactcatcattaagattctttcccctggt 320

                                                                       
Query: 121 gattctaggtagggtcttgttgacagtcaaaatcaaccaacacaaagtctaaatattcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattctaggtagggtcttgttgacagtcaaaatcaaccaacacaaagtctaaatattcct 380

                                                                       
Query: 181 tttagttccttctaatcattattcagtaaccatgtatgttcatttcctttcctgttttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttagttccttctaatcattattcagtaaccatgtatgttcatttcctttcctgttttga 440

                                                                       
Query: 241 tgaaagggaagtttgtttttttctaatagtttggaggcatagagaccatcatggtggaaa 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaagggaagtttgtttttt-ctaatagtttggaggcatagagaccatcatggtggaaa 499

                                
Query: 301 gctaaaggatggtgaggtatc 321
           |||||||||||||||||||||
Sbjct: 500 gctaaaggatggtgaggtatc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)