BAC Information

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BAC

Clone NameMSMg01-198C14
Chromosome8 (Build37)
Map Location 117,623,335 - 117,641,873
singlet/doubletdoublet
Overlap geneWwox
Upstream geneNudt7, AI427515, Clec3a
Downstream geneMaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198C14.T7 (MSMg01no198_c14.b1)MSMg01-198C14.TJ (MSMg01no198_c14.g1)
ACCAG385603AG385604
length726750
length of high quality
(start - end)		348 (379 - 726)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no198_c14.b1 PHD_FILE: MSMg01no198_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:18 2005CHROMAT_FILE: MSMg01no198_c14.g1 PHD_FILE: MSMg01no198_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,623,335 - 117,623,681)(117,641,588 - 117,641,873)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTACATTGACTGCCCTCAATGATAAGCTGTGATCAGGACATGTAG
CCAAATAAACTCTTTTCCCCATTGCGATGGTTTGGGTCAGAATTTTATCA
CAGCAGCAGAAAACAACTTAGGATATTAAACCATTGGGACAAACAACAGT
ATGGGGAAAAATGAGAGAGAAAAGTGAAGGAGAGACACTCACTGAGGAGC
TCTGGAAAATTCTGTGCTACCACTGAGGTAACCACCCTACACATCTTTAT
TGAATACTCTCTGTTCATGGATCAGAGATGAACGTACCTAGAACTTTGAG
CCAGAAATATTATCGGAGCTCCACACCCAATGCTATGCTGATCTGAAAGC
CTCCAGTTCAGTAGCTGCGCATGATTGACTGGCCTTGTGTTTTAAGGGCA
AAAGGGAGACACCAAAGGCCATCTTCTCAGGATCTTCAAGCTCGGGAGAC
CTACAGTCATGAAGACAGAGGTGTTGAGGTAACTAGATAGACCCGGATGT
AGAATCTGCAGACGTGGCATTACTGGTGGATCTTGGCTGGAATACAGAGA
GACAGGGGTTTGGGTTTAACCAGTTGGACGACATACAGAAAAGAATTTAT
AGAAGAGCAAGCTCTGAGATGAAGGTTGAAGGTACTTCCAGCTGGCATTG
CTCGTAGGTCTGGACCACAGTCTTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGATGAGAGGTGTGGGGTACAAG
GAGACCTTGGTTCCCACGGAAACACCTGCTCTGGTGTCTCTGCCCCCACA
CAGGTGACATCTCTACTGCTGTGGCAAGGCCACCGGCTGTTGACCTGGTT
GAACCCCATGCACTCATACTTGGGGAAAGGAAGTAGAGAGAAGGAAAGAG
AGAGTAAGAGAGTGAGGGAGCGGCCCATGACAATGAAGTCATCCTGTGAT
CTCAAAGGGACACTGCCCGGCGGGCGCTAGTTGCCTCAGACAGCTCACCT
GGCTGTTGTGCGGATTATTAGCCNNACCCAANCACTTCCTCACCGAAGGG
ACAGTGGTATGTGGCTTGGAGGGAAGTCCCATTCTCCATTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTACTTACTTACTAT
GCATACTTGCGCACATATATACATTTACAACCATAAATCTCTATCTTCAA
ATGAGTATTTTTCATTCCCAATTTCGTTTTATGTTTGACTTTCTGAACAC
GCACAAATAGATACTTATTACTTCTTGTATCATGCAACTTTAACATATCA
TCTCTTGACCCTCCTTCCCCCCTCCCCACCTTTATTATAACATCTTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_c14.b1 MSMg01no198_c14.b1 CHROMAT_FILE:
MSMg01no198_c14.b1 PHD_FILE: MSMg01no198_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:18 2005
         (348 letters)



>mm_chr8_117623135_117623882
          Length = 748

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/347 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgctatgctgatctgaaagcctccagttcagtagctgcgcatgattgactggccttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgctatgctgatctgaaagcctccagttcagtagctgcgcatgattgactggccttgt 260

                                                                       
Query: 61  gttttaagggcaaaagggagacaccaaaggccatcttctcaggatcttcaagctcgggag 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttaagggcaaaagggagacgccaaaggccatcttctcaggatcttcaagctcgggag 320

                                                                       
Query: 121 acctacagtcatgaagacagaggtgttgaggtaactagatagacccggatgtagaatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctacagtcatgaagacagaggtgttgaggtaactagatagacccggatgtagaatctg 380

                                                                       
Query: 181 cagacgtggcattactggtggatcttggctggaatacagagagacaggggtttgggttta 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagacgtggccttactggtggatcttggctggaatacagagagacaggggtttgggttta 440

                                                                       
Query: 241 accagttggacgacatacagaaaagaatttatagaagagcaagctctgagatgaaggttg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accagttggacaacatacagaaaagaatttatagaagagcaagctctgagatgaaggttg 500

                                                          
Query: 301 aaggtacttccagctggcattgctcgtaggtctggaccacagtcttt 347
           |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 aaggtacttccagctggcattgctcgtaggtctggaccacagccttt 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no198_c14.g1 MSMg01no198_c14.g1 CHROMAT_FILE:
MSMg01no198_c14.g1 PHD_FILE: MSMg01no198_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:18 2005
         (286 letters)



>mm_chr8_117641528_117642213
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagatgagaggtgtggggtacaaggagaccttggttcccacggaaacacctgctctggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 346 aagatgagaggtgtggggtacaaggagaccttggttcccacggaaacacttgctctggtg 287

                                                                       
Query: 61  tctctgcccccacacaggtgacatctctactgctgtggcaaggccaccggctgttgacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tctctgcccccacacaggtgacatctctactgctgtggcaaggccaccggctgttgacct 227

                                                                       
Query: 121 ggttgaaccccatgcactcatacttggggaaaggaagtagagagaaggaaagagagagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ggttgaaccccatgcactcatacttggggaaaggaagtagagagaaggaaagagagagta 167

                                                                       
Query: 181 agagagtgagggagcggcccatgacaatgaagtcatcctgtgatctcaaagggacactgc 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 agagagcgagggagcggcccatgacaatgaagtcatcctgtgatctcaaagggacactgc 107

                                                         
Query: 241 ccggcgggcgctagttgcctcagacagctcacctggctgttgtgcg 286
           ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ccggccggcgctagttgcctcagacagctcacctggctgttgtgcg 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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