BAC Information

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BAC

Clone NameMSMg01-198P07
Chromosome8 (Build37)
Map Location 94,769,359 - 94,917,637
singlet/doubletdoublet
Overlap gene4933436C20Rik, Irx5
Upstream geneRpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
Downstream geneIrx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198P07.T7 (MSMg01no198_p07.b1)MSMg01-198P07.TJ (MSMg01no198_p07.g1)
ACCAG386073AG386074
length726732
length of high quality
(start - end)
314 (46 - 359)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no198_p07.b1 PHD_FILE: MSMg01no198_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:21 2005CHROMAT_FILE: MSMg01no198_p07.g1 PHD_FILE: MSMg01no198_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,769,359 - 94,769,669)(94,917,351 - 94,917,637)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCATCCCAGAGAATTAAAACAAAGAAGCATTTAATAACTTGAGGG
TTGTATGAGAACCAATGCCCTAGCTGTCTGAGGATGGGGCTCCCGGCTGC
CCAGCCAGGCAAACTGAGTCTTTGTCAAGCAAACAAGAGCAGAAGCCAGC
GCTTCATGAATACCTAAAGTCATGGTGTTCTAAGAGCTACCTCTTCAGTG
ACAGAATAAACTGGAAAATGTCTCCAGCCCAGGAGGATGAAGGAGCTTGA
CTCTGTCTCGGCCCCAGCCTGGGTGGGGGAAATTGTATCTACTGTGAGAA
CTCATAGCTACTTTTCTGACCCTCCCACCCTGAGGTTGATCCTGGAATCA
TCCAGCCGAGTGGTCTCACACTGGGAAGGTCCCCTGAAGAGGAAAACCTG
GCAGTCATTATCAAGGACGCTGAGGGGATGTATTCCCAGGCCAGCCTCAA
CATGGCTTCCGAATGTGAAGCCTCATGAAAAATGAGCTCACAACACAAAA
TTACAAAACACACAAAGCCTCATAAATGCACCTAAGGCTAAGCTCTGAGC
CTTGACCCTCAGCCACGCAGGGGATAGGCATGTGGATGATCCATAGACTA
AGCTCTCCATTGTGTGATAACACAAACCTTCTGTACCACTTACTTACATT
ATTGCTTGACACAAATGATCCATAGN
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGACAGCCTGTCAGACCAGGTCA
AAGATGAAAGAGGAAAGGACAGAAGGAGGAAGGAAGGAGGGAGGAATAGC
ATAACAAAGAAAGGAAGGAAGAAAAGAAGAATGGAAGGAAGGAAGAAAAT
GATGTAATATCAAAAAAGATTAAATTTATTCTTCAAGAGTGAAAAGGGGA
CAAGAAAGAGAAATGGGAGTGAATATTATATGCAAGAAGATGTTATAAGG
AAAGCCATTATTACATATAACTAATATATACTAATAAATTTTTAAAGAAA
AGTTTAAATTCTGACTTTGTCACCCCCTACCTGCGTGATCTTAGGAAACA
TGCTACTGATCTCTGAGCTCTGTTTCCTCATTAGTACAGCCCAGTCTTGA
ACTCAAGACGTAACTGTGAGCTTGGGAAATGGGTAGAGTGTTGGGAAGGG
GTCAAAGAGCTGGATTTACTTACCCAATTAGGATGCGCGTCCCTGTGTGA
CAGATTCCCCTGGACCTTGTAACCATCTGCTTCACATTCTATGATTCTCC
CTCCCCTATTTTATTCGTCGACCATGTTCTTCTTATACAATACCCGAATC
GCTGTAACCCCCGTCTTGCCCTGTTTGCTTCGCATATGATTCAGCTAGGC
TGTCCCCGAATGCGCATGCAATTTCTCCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_p07.b1 MSMg01no198_p07.b1 CHROMAT_FILE:
MSMg01no198_p07.b1 PHD_FILE: MSMg01no198_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:21 2005
         (314 letters)



>mm_chr8_94769156_94769869
          Length = 714

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccatcccagagaattaaaacaaagaagcatttaataacttgagggttgtatga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccatcccagagaattaaaacaaagaagcatttaataacttgagggttgtatga 263

                                                                       
Query: 64  gaaccaatgccctagctgtctgaggatggggctcccggctgcccagccaggcaaactgag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaccaatgccctagctgtctgaggatggggctcccggctgcccagccaggcaaactgag 323

                                                                       
Query: 124 tctttgtcaagcaaacaagagcagaagccagcgcttcatgaatacctaaagtcatggtgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctttgtcaagcaaacaagagcagaagccagcgcttcatgaatacctaaagtcatggtgt 383

                                                                       
Query: 184 tctaagagctacctcttcagtgacagaataaactggaaaatgtctccagcccaggaggat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctaagagctacctcttcagtgacagaataaactggaaaatgtctccagcccaggaggat 443

                                                                       
Query: 244 gaaggagcttgactctgtctcggccccagcctgggtgggggaaattgtatctactgtgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaggagcttgactctgtctcggccccagcctgggtgggggaaattgtatctactgtgag 503

                      
Query: 304 aactcatagct 314
           |||||||||||
Sbjct: 504 aactcatagct 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no198_p07.g1 MSMg01no198_p07.g1 CHROMAT_FILE:
MSMg01no198_p07.g1 PHD_FILE: MSMg01no198_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:21 2005
         (287 letters)



>mm_chr8_94917029_94917715
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacagcctgtcagaccaggtcaaagatgaaagaggaaaggacagaaggaggaaggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aagacagcctgtcagaccaggtcaaagatgaaagaggaaaggacagaaggaggaaggaag 550

                                                                       
Query: 61  gagggaggaatagcataacaaagaaaggaaggaagaaaagaagaatggaaggaaggaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gagggaggaatagcataacaaagaaaggaaggaagaaaagaagaatggaaggaaggaaga 490

                                                                       
Query: 121 aaatgatgtaatatcaaaaaagattaaatttattcttcaagagtgaaaaggggacaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaatgatgtaatatcaaaaaagattaaatttattcttcaagagtgaaaaggggacaagaa 430

                                                                       
Query: 181 agagaaatgggagtgaatattatatgcaagaagatgttataaggaaagccattattacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agagaaatgggagtgaatattatatgcaagaagatgttataaggaaagccattattacat 370

                                                          
Query: 241 ataactaatatatactaataaatttttaaagaaaagtttaaattctg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ataactaatatatactaataaatttttaaagaaaagtttaaattctg 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)