BAC Information

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BAC

Clone NameMSMg01-199F20
Chromosome8 (Build37)
Map Location 30,900,187 - 30,900,514
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199F20.T7 (MSMg01no199_f20.b1)MSMg01-199F20.TJ (MSMg01no199_f20.g1)
ACCAG386329AG386330
length745749
length of high quality
(start - end)
367 (46 - 412)328 (90 - 417)
definitionCHROMAT_FILE: MSMg01no199_f20.b1 PHD_FILE: MSMg01no199_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:54 2005CHROMAT_FILE: MSMg01no199_f20.g1 PHD_FILE: MSMg01no199_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATGACCACCGAATGGCTGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACTTCACTCCAGTCAGAATGGCTAAGATCAAAATCTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGTTTCCTCAG
AAAATTGGACATAGTACTACCAGAGGATCCCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATG
TTCATACCAGCCTTACCCACACACCCAGAAGCTGGAAAGAACCCAGATTC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGA
TTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTTTTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTAAGGCAACCCAATCACAAAGG
AACTTGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTT
AGGATACCCAAGATATAGGATACAATTTGCTAAACACATGAAATTCAAGA
ACAATGAAGACCATAGTGTGGACACTTTGCCCCTTCTTAGACTCT
CATACTATANACCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGTAGGT
CATCTTGACCTCAAATTTGTGGCAATCCTCTAGCCTCTGGCTTCTGAGTG
CTGAAAGTACTGGTGCCTGTATGTAACATGACACTTAGCAGCAATACTTA
TAAAGAGGCAGTCATCCCTAGATCTAGAATTAGACAGTCAATAATGGCCT
TCAGCATTCTATATAGTTGCAGTGACTCTATAAGTGACAACAGCACTCTG
CCTGCCTATCAGAAATTACAGTTTTTTGCTCATATTAAAAAAAAACATGA
TATAGTATTATAAAGTAGAATGTTATTAACATTAATTTATGAATTTTAGA
CAATAGCAGGACACAGATAATGAAGCCCCCCTGTACCCACTAACAGAAAT
GCTACAGTGTACTTTTTTTTTAAGCTAGATGACTGATAAAGTACAACAGA
AATTAAACTGGATAAGAGTTTCATTAGTGATCTGTTTAAGCTTGTTTCTT
CCTTTACACTTTAGGACCACTATTGCCTCAATATCAATGCCTTGTGCATA
CTTTCTTAATATTGTACCTTACGTTTCCTCTACTTTTGTAAACCTCGATC
CTTCTTCCCCCACCTTCTCCTTTTTTCCTATATATTTCTAATTTACCCCC
ATGATTTTCCTCTGCGTTGCTTTTTATTTATAAACAATCCTCCCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_f20.g1 MSMg01no199_f20.g1 CHROMAT_FILE:
MSMg01no199_f20.g1 PHD_FILE: MSMg01no199_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:54 2005
         (328 letters)



>mm_chr8_30899913_30900640
          Length = 728

 Score =  627 bits (324), Expect = 0.0
 Identities = 327/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgtaggtcatcttgacctcaaatttgtggcaatcctctagcctctggcttctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 actgtgtaggtcatcttgacctcaaatttgtggcaatcctctagcctctggcttctgagt 543

                                                                       
Query: 61  gctgaaagtactggtgcctgtatgtaacatgacacttagcagcaatacttataaagaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gctgaaagtactggtgcctgtatgtaacatgacacttagcagcaatacttataaagaggc 483

                                                                       
Query: 121 agtcatccctagatctagaattagacagtcaataatggccttcagcattctatatagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agtcatccctagatctagaattagacagtcaataatggccttcagcattctatatagttg 423

                                                                       
Query: 181 cagtgactctataagtgacaacagcactctgcctgcctatcagaaattacagttttttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cagtgactctataagtgacaacagcactctgcctgcctatcagaaattacagttttttgc 363

                                                                       
Query: 241 tcatattaaaaaaaaacatgatatagtattataaagtagaatgttattaacattaattta 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcaaattaaaaaaaaacatgatatagtattataaagtagaatgttattaacattaattta 303

                                       
Query: 301 tgaattttagacaatagcaggacacaga 328
           ||||||||||||||||||||||||||||
Sbjct: 302 tgaattttagacaatagcaggacacaga 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)