BAC Information

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BAC

Clone NameMSMg01-199J12
Chromosome8 (Build37)
Map Location 74,675,850 - 74,729,981
singlet/doubletdoublet
Overlap geneTpm4, Rab8a, Hsh2d, Cib3
Upstream geneLOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374
Downstream gene2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199J12.T7 (MSMg01no199_j12.b1)MSMg01-199J12.TJ (MSMg01no199_j12.g1)
ACCAG386471AG386472
length732773
length of high quality
(start - end)		599 (45 - 643)370 (83 - 452)
definitionCHROMAT_FILE: MSMg01no199_j12.b1 PHD_FILE: MSMg01no199_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:12 2005CHROMAT_FILE: MSMg01no199_j12.g1 PHD_FILE: MSMg01no199_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:12 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(74,675,850 - 74,676,444)(74,729,612 - 74,729,981)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGACCAAATATTTTGTGTTAGACAAGCTTTGAGCACCAGTTAAGT
TTAATTCTTTCCTTTTCCATTCAAATGGCACCAGCTTCTCTGATTATTCT
TATTCTTAAATTGCATTTATTCCTAAAATAGGCAGGGAATTTCACACTGA
GTATAGTTGCTTAAGTCTGAGGGCATTTGGTTCTTGGGAATTAGTCAGCC
CCACACTTTGAAGCACAGGCTCAAGTATCTAATCTTAGCTGGTTGCTGTT
GGGGAAGTTTTGTGAGGCTAGGGGTTGTCACAAGAAAATATGTGGAAATT
TTCCACCCAGAGCAAAAATTAAGTCTCCTATGGGAAGTTATAAAGCACAA
CTAGATTAGCCTGATCATACTGAGTCTGCTCCACACGGCCCTGTGCAGAA
CAGATTGTCTTTAAGCATTCCAAGCGAGAATGCTGGGGTGATCATTGTTG
CCCATGTGCCTTCTGACTGAGCTTTAATGCTGTTCCATGTTACATCTTTC
CTTCACTCCAGAATTGTTCTCTGAGGAGCAAGCGTCTTATTCCAGGACTT
TTCTGCTGTGGTCTAATGATATACCCAGCAGGGAATATGGCAGAGTCCAA
CCCTTTTCAGCCAGGGTTATACGGCGAAACTCTGTCTCACATAATAAAAA
GGCTTAGGTGCCTTCAATACATTGAGCACTGG

CTTCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTGTCTGGCTGAGAC
ACATTAAGCACTCAATAAACCGAATGAATGAAAAAGCTATCGCAGTGCCT
GGCATGCAGAAGGCACTCCATAAATGCCGAAGTAAGAGAAGATCAGTAAT
CATGGTTCCTGGCACACAGTAAATAAAATAAACAGTTGTCACACTGGTTC
AATGGCTCTCAGTGCCCATGGTGCGAAGCTGTAGGGTAATCAGTAGGTGC
TCAATAACTGCTGCATGAGTTCTGGGTATCCATGTACAGCTCCAAACATG
GGGGGATAGATGTGTCCTTCTGCTGCCTGCTGTCCCCCCTACTGTCGGCT
TCACAGACTTCAACAATGACAACTACATCTGTGCATGGGACCTGGAGCAG
ACCGCGACCAGGCTGACTCGTGGGGAACTGAGTGCTGAGGAAGTGACCCT
GGTCTGTGAGAAGGTGCTGGATGAAGCAGATGTAGACCAAGACGGGCGAC
TGTCCCTGGAGGACTTCCAAAATATGATCCTGCGAGCTCCAGACTTCCTC
AGGTAAAAGTCCAAACCCCAGCATTGAGAATTCCCGCTTGTCGCCCTCAG
ATGGCCTCAGGGAAACCTCCCCTAGCTTCTCCAGTTTTTAGTCCATTCTT
GTCCTGAAGCTCTACACCCTCAGGACTGCTTGTTAACCTTTCCTCCTTGT
GTATATAAAATTTATCCTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_j12.b1 MSMg01no199_j12.b1 CHROMAT_FILE:
MSMg01no199_j12.b1 PHD_FILE: MSMg01no199_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:12 2005
         (599 letters)



>mm_chr8_74675646_74676644
          Length = 999

 Score = 1151 bits (595), Expect = 0.0
 Identities = 595/595 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaccaaatattttgtgttagacaagctttgagcaccagttaagtttaattct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaccaaatattttgtgttagacaagctttgagcaccagttaagtttaattct 264

                                                                       
Query: 65  ttccttttccattcaaatggcaccagcttctctgattattcttattcttaaattgcattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccttttccattcaaatggcaccagcttctctgattattcttattcttaaattgcattt 324

                                                                       
Query: 125 attcctaaaataggcagggaatttcacactgagtatagttgcttaagtctgagggcattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcctaaaataggcagggaatttcacactgagtatagttgcttaagtctgagggcattt 384

                                                                       
Query: 185 ggttcttgggaattagtcagccccacactttgaagcacaggctcaagtatctaatcttag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggttcttgggaattagtcagccccacactttgaagcacaggctcaagtatctaatcttag 444

                                                                       
Query: 245 ctggttgctgttggggaagttttgtgaggctaggggttgtcacaagaaaatatgtggaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctggttgctgttggggaagttttgtgaggctaggggttgtcacaagaaaatatgtggaaa 504

                                                                       
Query: 305 ttttccacccagagcaaaaattaagtctcctatgggaagttataaagcacaactagatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttccacccagagcaaaaattaagtctcctatgggaagttataaagcacaactagatta 564

                                                                       
Query: 365 gcctgatcatactgagtctgctccacacggccctgtgcagaacagattgtctttaagcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcctgatcatactgagtctgctccacacggccctgtgcagaacagattgtctttaagcat 624

                                                                       
Query: 425 tccaagcgagaatgctggggtgatcattgttgcccatgtgccttctgactgagctttaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccaagcgagaatgctggggtgatcattgttgcccatgtgccttctgactgagctttaat 684

                                                                       
Query: 485 gctgttccatgttacatctttccttcactccagaattgttctctgaggagcaagcgtctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctgttccatgttacatctttccttcactccagaattgttctctgaggagcaagcgtctt 744

                                                                  
Query: 545 attccaggacttttctgctgtggtctaatgatatacccagcagggaatatggcag 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attccaggacttttctgctgtggtctaatgatatacccagcagggaatatggcag 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no199_j12.g1 MSMg01no199_j12.g1 CHROMAT_FILE:
MSMg01no199_j12.g1 PHD_FILE: MSMg01no199_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:12 2005
         (370 letters)



>mm_chr8_74729318_74730087
          Length = 770

 Score =  716 bits (370), Expect = 0.0
 Identities = 370/370 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggtgtctggctgagacacattaagcactcaataaaccgaatgaatgaaaaagctatcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 agggtgtctggctgagacacattaagcactcaataaaccgaatgaatgaaaaagctatcg 605

                                                                       
Query: 61  cagtgcctggcatgcagaaggcactccataaatgccgaagtaagagaagatcagtaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cagtgcctggcatgcagaaggcactccataaatgccgaagtaagagaagatcagtaatca 545

                                                                       
Query: 121 tggttcctggcacacagtaaataaaataaacagttgtcacactggttcaatggctctcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tggttcctggcacacagtaaataaaataaacagttgtcacactggttcaatggctctcag 485

                                                                       
Query: 181 tgcccatggtgcgaagctgtagggtaatcagtaggtgctcaataactgctgcatgagttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgcccatggtgcgaagctgtagggtaatcagtaggtgctcaataactgctgcatgagttc 425

                                                                       
Query: 241 tgggtatccatgtacagctccaaacatggggggatagatgtgtccttctgctgcctgctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgggtatccatgtacagctccaaacatggggggatagatgtgtccttctgctgcctgctg 365

                                                                       
Query: 301 tcccccctactgtcggcttcacagacttcaacaatgacaactacatctgtgcatgggacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcccccctactgtcggcttcacagacttcaacaatgacaactacatctgtgcatgggacc 305

                     
Query: 361 tggagcagac 370
           ||||||||||
Sbjct: 304 tggagcagac 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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