BAC Information

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BAC

Clone NameMSMg01-203F14
Chromosome8 (Build37)
Map Location 23,482,727 - 23,483,014
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte
Downstream geneSlc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203F14.T7 (MSMg01no203_f14.b1)MSMg01-203F14.TJ (MSMg01no203_f14.g1)
ACCAG388151AG388152
length737778
length of high quality
(start - end)
---288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no203_f14.b1 PHD_FILE: MSMg01no203_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:28 2005CHROMAT_FILE: MSMg01no203_f14.g1 PHD_FILE: MSMg01no203_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCAAACGATCACAATTCCGACNCGANGGAAGGNGAANGTTACCGN
AGGNGAGNGGGANGGNGAGGGNANNNGANNGAGAGAAGAAGTGTTTGCCA
NAAGAGAAGNAGGAGANAGGGAGGAGAAGGAGAAGGAGAAGAANGAGAGA
AAAAGAGAGGGGAGAGAAAANGGAGGANAGGAAAAAGGNAGNAAAAGGAA
GGAAAAAAAGAGGAAGGNGAAAGTTTTTTGGANAANGGGGGAGAGGATNA
AAGAGAGAGAGGAAAGGAAGGATATGGNAAGAGAAAATATTGATAAATTG
GAGGAGAGGANAAAGAAGAGAGAGNNAAATTTTTTTCCCCCCCCCCCGCC
GCTAAAGGAAGACACAGGGGATATGAGGGTGGTCCACCCCAAAAAAAAAA
AAAAAAGACTGGGGGGGGGGGGAGAACCAGAAAAATAACAGCAAGACCGA
ATATGAATGCAACAGGAGAATGAAAAAATTGAAAGAAGACTGCCACTGAA
AGAAAGCGACGGCATAAGAGCAGAAGTTAAGAAGATCTTTCATTGGGAAG
AGGCGAAGAAAAAAAGGGAAAGAGAAAAAAAAAATCACAAAAGAAGAAAA
AGGAAGAGGGGAGAAGGAAAAGAACCAAAAAAAATTTTTTTTTTTTTTTT
ACAAGCGAGAAGGAAGAAGAAAACAAAGGATAGAAGGGGATAACAGGGAA
AGAAGCAGAGAGGACGAGTAGGGGTGTGGGGTCGGGG
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTTGGCCCGAATTGTTGACATCC
TTACTAATAAAAAGAAAAATCCAAATCAAGTTTATTTTAGTGAAGCCAAA
AATGGCATTTTTGTTTTTTCAAGGACCATCATGGCTTTGAGATCCTGTGT
CCACAAGGGGATTTGGGATGGAGCAGTACTTGATACCAAACAGAAAATGC
ATCCCACGTGGACACAAGGGTAACCAGTGCTCAAAGGCACCTTTCCTCAG
GTGCTCGGTTTAGGAGAGCAGAATCAATGCACTTTAATACATGTAGGTCA
CTCAGCTTCCTTCTTTTTCTTCCCCCCCCCACCCCCCAGTGGGAATCACC
CAGGGTTTCAATTTTCACCCCCCCTCTGAAAAACATACTTTCTGTGTGTG
TAATAAAGGTAGTTTGTCTCATAATTCATTCTGTGTTTTGCCATACAATG
GGTATTGACCTAATCGTGAGAACCAAACGCCGGTTTGCGTTCTTTCCCCC
TTTGTATTCCCTAAATCATTTCCCTTTTTTTCCTATCCTTCCTCCTCATT
TTCCCACATCTTTTTATCCCCCCTTATTTATTTCCCTATATATTATCCTA
TATAACCCTTTTTGTATTTACTTCCTTTCTCTCACTCCTTTATCCGCTCC
CCCTCTTATTTTATTTTTTTCCCCTACTCACTTATCTTCCACACCTCCCC
CTCTTTTATTTCATCTACTTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_f14.g1 MSMg01no203_f14.g1 CHROMAT_FILE:
MSMg01no203_f14.g1 PHD_FILE: MSMg01no203_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:28 2005
         (288 letters)



>mm_chr8_23482527_23483214
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttggcccgaattgttgacatccttactaataaaaagaaaaatccaaatcaagtttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 accttggcccgaattgttgacatccttactaataaaaagaaaaatccaaatcaagtttat 429

                                                                       
Query: 61  tttagtgaagccaaaaatggcatttttgttttttcaaggaccatcatggctttgagatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tttagtgaagccaaaaatggcatttttgttttttcaaggaccatcatggctttgagatcc 369

                                                                       
Query: 121 tgtgtccacaaggggatttgggatggagcagtacttgataccaaacagaaaatgcatccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgtgtccacaaggggatttgggatggagcagtacttgataccaaacagaaaatgcatccc 309

                                                                       
Query: 181 acgtggacacaagggtaaccagtgctcaaaggcacctttcctcaggtgctcggtttagga 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aagtggacacaagggtaaccagtgctcaaaggcacctttcctcaggtgctcggtttagga 249

                                                           
Query: 241 gagcagaatcaatgcactttaatacatgtaggtcactcagcttccttc 288
           |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gagcagaagcaatgcactttaatacatgtaggtcactcagcttccttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)