BAC Information

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BAC

Clone NameMSMg01-203I04
Chromosome8 (Build37)
Map Location 80,647,383 - 80,647,680
singlet/doubletsinglet
Overlap genenone
Upstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra, EG622803
Downstream geneTtc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340, EG666346, D630040G17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203I04.T7 (MSMg01no203_i04.b1)MSMg01-203I04.TJ (MSMg01no203_i04.g1)
ACCAG388250AG388251
length1,034739
length of high quality
(start - end)
---298 (77 - 374)
definitionCHROMAT_FILE: MSMg01no203_i04.b1 PHD_FILE: MSMg01no203_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:41 2005CHROMAT_FILE: MSMg01no203_i04.g1 PHD_FILE: MSMg01no203_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCTCTGCTCTTCCCCGCCCCCCCCCGTTTTTTCCCCCACCCTTTTTCC
CCCCTCCCCCGGCCCCGGCCCGGTTNTNTTTCTTCCCCTTTTCTTCTTTT
AAACCCCCGTCACCCNNTTCCCCCNTNNCCCCCTTTCCCCCCTCTAATAA
TTTGGCCGGCCGNCCTAATACGNACTTCCCACTATAGGTTCCGCAGGGAT
CCCGNCGGGCAAATTCCCTCAAGCTGGCGTTTACCCCTAAATTTTTCCAC
CCTGGAGGGCAACACAGCTTACACTAAAACGGGGCCGTGCTGGAAAAACC
TGGAATNNTTTTGGAACCCCAGGTTTTTTCTATCCAACAAACAATAAACT
CTTTACCTTAGAAAGCCCCCCCTCCTATTTCCCCTTTTTTAAACCCGCCT
CTCCCCTGGAACGCGTGCGCGCCCGTATTTTTTTTCCGTATCTCTCCCAC
CCTCTGCCCCTCTTTCCCTTGCGTTTCTCTTTTTTTCCTATGCGTTTACC
CCCTCCCCCCTCTCCCGGCGAATGGGGCGTTAATAAATCTACCAAGGGGG
GCCCCCCCCTCCCCTCTTTGTCGTATCCTACCCCCCCCCTCCTTCTTTCC
CTTTCCCCCCTTTTTCCCTTGCGCCCGTTGCGCCTCCCTCCTCCCAAACA
CTTTTTTGCTTCTGTCCTGCCGCCCCCCCCTTATTCCCCGCGTTGTGTCC
GCCGCGCATTATTAACATTACCTTTGTGTCGCCCCCTCCCTTCCTCTCGC
CCGGTTGCTCTTCCCTCTTCTCCTTCCTCCCCCGTTTGCGGTTCTCACCA
CACTCCCTTTTCCCCCCGCTCTCTCCATAAATTTAAATACAACGGCGATC
TCTTCCCCTTTCTCCCTTTCTTCTTTTCCCCCCCACTTCGTATCCTTTCC
ACCCTCTTCTCTTTTTCCTTTCCTCCCCCTCTCTTCTCCCTCTTTCTCCC
CCCCCACCTCTCCCCCCTCTTCTCCCCCTCTTTATCCCTATTTTTCTTAG
TGCTCCTTTCCGCCATCCCAACTCTCCCCNAATG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTGCATCTTCTATAGTTCTT
GTCTTCAACTGACTTCACGAGACACACCAGTTTTCAAACGGGAATCAAAG
TTGATTAGTGGCTCACCCCTAGCACCAACAGAGCATCTTTTATTCTTAAC
AAAAAGTTCAACAGGAATACCAGAGTTCATGAAGAAGACCCAGTAAGCTT
TCTGTATCCTGCTTTGTTTTCTGTTGGCTGTTGTACCTATTTGATCAACC
ATTTATAATGTGTCAATGAAAACCTTTGTAAATTTTGATTGACAAATACA
GTTTTAAAGTGTCCCTCTCTAAGTATGTCCGCGCGCTTGCATATTGAAGT
AAGTTTTTCCTGTGGTTTCCACCACTAAGCCTGAAATATTTGCTAACAAA
ATGGATCAAAGTGGAACTACGGGATGTAGCTGCAGGTTACTAATACTGCC
CATACATGACTGCAGATAGCGTTGACTCTATGAGTGCTTCTCTGCCAGTT
CCGTCTAACCCTTATTACATAACCCAATATTCTCTCACCATCTATAGCGA
TGGCCCCAGTGGCTAAGATTGCTGGTTGCTGTTCCAGACCCTCTGAGTTT
AATTCCCAGCATCTATACGGTGCGTCACCATTGTGTGCATTTGATGTCTT
CCCCCTGGTAAGCACCTGCCTGTGCTCATTCACCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_i04.g1 MSMg01no203_i04.g1 CHROMAT_FILE:
MSMg01no203_i04.g1 PHD_FILE: MSMg01no203_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:41 2005
         (298 letters)



>mm_chr8_80647183_80647880
          Length = 698

 Score =  530 bits (274), Expect = e-155
 Identities = 292/298 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctgcatcttctatagttcttgtcttcaactgacttcacgagacacaccagttttca 60
           ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tcttctgcatcttctgtagttcttgtcttcaactgacttcacgagacacatcagttttca 260

                                                                       
Query: 61  aacgggaatcaaagttgattagtggctcacccctagcaccaacagagcatcttttattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 261 aacgggaatcaaagttgattagtggctcacccctagcaccaacagagcatcctttgttct 320

                                                                       
Query: 121 taacaaaaagttcaacaggaataccagagttcatgaagaagacccagtaagctttctgta 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacaaaaggttcaacaggaataccagagttcatgaagaagacccagtaagctttctgta 380

                                                                       
Query: 181 tcctgctttgttttctgttggctgttgtacctatttgatcaaccatttataatgtgtcaa 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tcctgctttgttttctgttggctgttgtacctacttgatcaaccatttataatgtgtcaa 440

                                                                     
Query: 241 tgaaaacctttgtaaattttgattgacaaatacagttttaaagtgtccctctctaagt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaaacctttgtaaattttgattgacaaatacagttttaaagtgtccctctctaagt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)