BAC Information

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BAC

Clone NameMSMg01-204B13
Chromosome8 (Build37)
Map Location 49,054,168 - 49,054,553
singlet/doubletsinglet
Overlap geneWwc2
Upstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22
Downstream geneLOC100040113, Dctd, Odz3, 2900073C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204B13.T7 (MSMg01no204_b13.b1)MSMg01-204B13.TJ (MSMg01no204_b13.g1)
ACCAG388611AG388612
length890740
length of high quality
(start - end)
77 (44 - 120)518 (77 - 594)
definitionCHROMAT_FILE: MSMg01no204_b13.b1 PHD_FILE: MSMg01no204_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:31 2005CHROMAT_FILE: MSMg01no204_b13.g1 PHD_FILE: MSMg01no204_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCGCGGA
AATCTCACGTGCTTTTCTTTATATTGCTCATTCTGGAAGAAAAAACATTT
TCTTGGTTTTGACTTTTCCCCCTTAAATAAATAGTTTTAGTTTAAACAAA
AAATATATAAAAAAAAAAAACAAAAACAAAAAACAACACACAACAAAAAA
AAAAAAAACACCCCCAACCACACACCCCACACCACACCACCACAAACACC
AAAACACAACACAAAAAACAAAACCCCCCCACCACCACCCAACAAAACAC
AAAAACAAAAACCCACCCACCCACACCACAAACATAAAACAAAAAAAACA
ACAACAAAAAACAAAAAAAAAAAATTTTATTTTTACCCCCACCCCCCACC
CCCCCAAAAAAAAAAAAAAAAAAAAAAATAAATATAATAAACCCCACCAA
ACACCAAAAAAAAAAAAAAAAAAATNTTTTGTTCCTGCCACACAACAAAA
CACCAAACCAAAAACAACAAACAACAAAAACAAACAAGAAACATAACACA
AACAAACCACCCACAAACAACAAAACAAAACAAACAAACAAACACCAACC
CAAACTCAATATCCCAAAACAAACCCACAACAACCCAAATAATCACCCAA
ATAACACCAAATACAACACAAAAAAACCACAACACAACCACAAAACCCAC
ATATACACCACCATAACACCCAAAAAACAACCATAATATACCAACAAAAC
CCCACACAACACAACATAAAATACCCAAAAAAAACACAAATAATCACAAT
AAAAAACCCAAACAACCCACCCACAAACCCAAAACCCCACAATAAACAAC
CCAACTAATAACACCAAACAGACACACAACAACCTCACAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGATGGTTTGTATATACTTG
GCCCATTTGGACACTATTAGGAGCCGTGGCCCTGTTGGAGGAATTGTGTC
ACTGTGGGTGTGGGCTTTAAGACCCTCATTCTAACTGCCTGGAAGCCAGT
CTTCTGATAGCCTTCAGATGAAGATGTAGAACTCTCAGCTCCTCCTGCAC
CACGTCTGCCTGGATGCTGCCATGTTCCTGCCTTGATGATAATGCACTGA
ACCTCTGAACCTGTAAGCCAGCCCCAGTTAAATAGTGTCCTTGTAAGAGT
TGCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTCACTAATGCAT
TCAGTGAGAAGAAACCCCCCATTGCTCTTGGAGCCCATTTCTCTTCCCAA
AGGGAACATACAAGTTAGCTGTAAAAGAAACCCATTTCATACGACTGTAG
CGTCACTTTACACTGACTTGCTTGGCCTGAGAGATTGTATGATCCATTTG
TATATAGGTTTGCCTTTTCATATCCTCATTTTGTGAGTGTACTGAATTTT
TAAAAGCACTTTCTCATTTATGATTATGTGCCCTTTTTTCCATTCTTCAT
TTCATGGATTGATCTCCGTTCCTTACCCATGCTATGCCGCCTCTGCTCCA
CCCATGCACCCTCCATAACCTAAAACTCTGTAAAGTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_b13.g1 MSMg01no204_b13.g1 CHROMAT_FILE:
MSMg01no204_b13.g1 PHD_FILE: MSMg01no204_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:31 2005
         (518 letters)



>mm_chr8_49053648_49054565
          Length = 918

 Score =  578 bits (299), Expect = e-169
 Identities = 365/387 (94%), Gaps = 2/387 (0%)
 Strand = Plus / Minus

                                                                       
Query: 133 agccttcagatgaagatgtagaactctcagctcctcctgcaccacgtctgcctggatgct 192
           ||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct: 906 agcctccagatgaagatgtagaactctcagctcctccagcaccatgcctgcctggatgct 847

                                                                       
Query: 193 gccatgttcctgccttgatgataatgcactgaacctctgaacctgtaagccagccccagt 252
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 846 gccatgttcctgccttgatgataatgcactgaacctctgaacctgtaaggcagccccaat 787

                                                                       
Query: 253 taaatag-tgtccttgtaagagttgccttggtcatggtgtctgttcacagcagtaaaacc 311
           ||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 786 taaat-gttgtccttgtaagagttgccttggtcatggtgcctggtcacagcagtaaaacc 728

                                                                       
Query: 312 ctcactaatgcattcagtgagaagaaaccccccattgctcttggagcccatttctcttcc 371
           |||||||| |||||||||||||||||| |  ||||||||||| || ||||||||||||||
Sbjct: 727 ctcactaacgcattcagtgagaagaaatcttccattgctcttagaacccatttctcttcc 668

                                                                       
Query: 372 caaagggaacatacaagttagctgtaaaagaaacccatttcatacgactgtagcgtcact 431
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 caaagggaacatgcaagttagctgtaaaagaaacccatttcatacgactgtagcgtcact 608

                                                                       
Query: 432 ttacactgacttgcttggcctgagagattgtatgatccatttgtatataggtttgccttt 491
           ||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 607 ttacactgacttgtttggcctgagagattgtatgatccatttgtatatacacttgccttt 548

                                      
Query: 492 tcatatcctcattttgtgagtgtactg 518
           ||||||||| |||||||||||||||||
Sbjct: 547 tcatatccttattttgtgagtgtactg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)