BAC Information

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BAC

Clone NameMSMg01-206C20
Chromosome8 (Build37)
Map Location 30,497,561 - 30,498,135
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666446, LOC100042598, Unc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206C20.T7 (MSMg01no206_c20.b1)MSMg01-206C20.TJ (MSMg01no206_c20.g1)
ACCAG389888AG389889
length746744
length of high quality
(start - end)
311 (434 - 744)602 (131 - 732)
definitionCHROMAT_FILE: MSMg01no206_c20.b1 PHD_FILE: MSMg01no206_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:16 2005CHROMAT_FILE: MSMg01no206_c20.g1 PHD_FILE: MSMg01no206_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATGTACGCTGAATGGGTGCGAAGCACCTGAAAAAATATT
CAGACATCCTTAATCATCAGTTAACCTCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGTGAGGATGTGGAAAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGATGGTTCCTCAG
AAAAATGGACATAGTACTTCCAGAGGATCCCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTTCCAACCGGCAAGAAGAACACATGCTCAACTATG
TTCATAGCAGCCTTATTTGCCCCACCCAGAAGCTGGAAAGAACCCAGATG
CCTCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGA
AGTACTACTCAGCTATTCTAAAGAATGAATTTATGAAATTCCTTGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAACCAATCACAAAA
GAACTCACACAATATGCACTCACTGATAAGTGGATATTAGCCCAAAACTT
AGAATACCCAAGATATAAGATACAATTTGCGAAACATGTGAAAGTCAAGA
AGAACTAAGACCAAAGTGTGGACACTTTGCTCATTCTTAGAATTGG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAACTCTAGGGCACAGGAGATGTT
GAGAGAGGCCCAAGTACATTGTGTACCCTTTATTCTGAGTATGCCTATTT
TCTCAAATTAGGAAATAAGCTCTAATCTGAGGATGTTTAAGAGATAGGGA
AAGTTCTAAGGCATCATCCAGAAGAGGGCCACTGTTTCCTCATCTTTAGC
TATAATGAGCTGTCTCCTGTTCGGAGCTACCTGACGAGCTAGCTTGTTAT
CCAGGTATCTCAGGTTGACATTTTCTCTGCTCTGATGAATCCATACCTGC
TTCACAATTGCACTGTTTGCTGAGCACAAGAGCCAAGGTCCTGCATCCCT
GGTTCTGATCTCAGTGACTGCCCCACAAAGAACATTTAATCAATATTTAA
TAAATTAATAAGTTCTCAAGGACCTTGTTTTTAATAATATTTTTCACTGA
GTGTTCTGCTGGTGTGTGTATTTTATTAGCTATTGAGCTTCTCCCTACAT
TGATTATTCTATCCAAATGCTCAGTTTTTCTAAAAAAAAATTATCTTTAA
AAAGAAGCATGTTGCCTTTGCAGAATATTTTAACAGCCCGGATTCAGACT
GTTTATGTATAGCAATGATTTTCATCAGTCTGTAATCCAGGACAGGGATT
TCAACAGTTCCTAGTCTACCATCACTGTGAAACTGTCTGAGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_c20.g1 MSMg01no206_c20.g1 CHROMAT_FILE:
MSMg01no206_c20.g1 PHD_FILE: MSMg01no206_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:16 2005
         (602 letters)



>mm_chr8_30497134_30498135
          Length = 1002

 Score =  998 bits (516), Expect = 0.0
 Identities = 557/576 (96%), Gaps = 12/576 (2%)
 Strand = Plus / Minus

                                                                        
Query: 38   agctctaatctgaggatgtttaagagatagggaaagttctaaggcatcatccagaagagg 97
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1002 agctctaatctgaggatgtttaagagatagggaaagttctaaggcatcatccagaagaga 943

                                                                        
Query: 98   gccactgtttcctcatctttagctataatgagctgtctcctgttcggagctacctgacga 157
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 942  gccactgtttcctcatctttagctataatgagctgtctcctgttcggagctacctgacaa 883

                                                                        
Query: 158  gctagcttgttatccaggtatctcaggttgacattttctctgctctgatgaatccatacc 217
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882  gctagcttgttatccagttatctcaggttgacattttctctgctctgatgaatccatacc 823

                                                                        
Query: 218  tgcttcacaattgcactgtttgctgagcacaagagccaaggtcctgcatccctggttctg 277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822  tgcttcacaattgcactgtttgctgagcacaagagccaaggtcctgcatccctggttctg 763

                                                                        
Query: 278  atctcagtgactgccccacaaagaacatttaatcaatatttaataaattaataagttctc 337
            ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 762  atctcagtgactggcccacaaaggacatttaatcaatatttaataaattaataagttctc 703

                                                                        
Query: 338  aaggaccttgtttttaataatatttttcactgagtgttctgctggtgtgtgtattttatt 397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702  aaggaccttgtttttaataatatttttcactgagtgttctgctggtgtgtgtattttatt 643

                                                                        
Query: 398  agctattgagcttctccctacattgattattctatccaaatgctcagtttttctaaaaaa 457
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 642  agctattgagcttctccctacattgattattctatccaaatgctcagtttttctcaaaaa 583

                                                                        
Query: 458  aaattatctttaaaaagaagcatgttgcctttgcagaatattttaacagcccg-----g- 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |     | 
Sbjct: 582  aaattatctttaaaaagaagcatgttgcctttgcagaatattttaacagcctgtttatgt 523

                                                                        
Query: 512  at-----tcagactgtttatgtatagcaatgattttcatcagtctgtaatccaggacagg 566
            ||     | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522  atagcaat-agactgtttatgtatagcaatgattttcatcagtctgtaatccaggacagg 464

                                                
Query: 567  gatttcaacagttcctagtctaccatcactgtgaaa 602
            ||||||||||||||||||||||||||||||||||||
Sbjct: 463  gatttcaacagttcctagtctaccatcactgtgaaa 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)