BAC Information

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BAC

Clone NameMSMg01-206E16
Chromosome8 (Build37)
Map Location 75,727,222 - 75,727,841
singlet/doubletsinglet
Overlap geneLarge
Upstream geneCib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3
Downstream geneLOC100039001, LOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206E16.T7 (MSMg01no206_e16.b1)MSMg01-206E16.TJ (MSMg01no206_e16.g1)
ACCAG389962AG389963
length734738
length of high quality
(start - end)
606 (69 - 674)634 (78 - 711)
definitionCHROMAT_FILE: MSMg01no206_e16.b1 PHD_FILE: MSMg01no206_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:25 2005CHROMAT_FILE: MSMg01no206_e16.g1 PHD_FILE: MSMg01no206_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGAAATTCTCAGGGAAATGGGTGGAACTAGAAAATATCCTGAGTG
AGGTAACCTAATCACACGGTATGCACATACTGATAAGTGGATATAAGCCC
TAAAGCCCCAAATACTCAAGATATAATATGAATCTCAAGAAGATAGAAAA
CCAAAGTGTGGATGCTTTCGTTCTTCTTACAAGGAGAAAATATTTATTCA
CAGGAGTAAATATGGTGCTAAAGTGCAGAGCAGAGACTGTAGGAAAGGCC
ACCCAGAGACTGTCCCAAAGGTACATGGATTCATCCAATATACAGTTACC
AAACCCAGACACTATTGTGGGTACCAAGAATTGCATGTTGAAAGGAGTCT
GATATGGCTGTCTCCCGACATGCTCTACCAGAGCCTTACAAATACAGAGG
CAGATGTCAGCAGCCAACCATTGGACAAAGCATGTAGTTCCTAATAGAGG
AGTTATAGAAGGGATTGAAGGGGTTTATAACCCCATAGGAAGAACAACAA
TATCAATCAACTGGACCCTTCCCCCCACCACATCCTCAGAGCTCACAGGG
ACTAAGGCATCAACCAAGGAGTACACATGGCTTTAGCTGCATATGTAGCA
GAGGTTGGCCTTGTCAGGCATCAATGGGAGGAGAGGTCCTTGGTTTTATG
CAGGCTCTAGAGATGAGCCTGTGTAGAGGAATCT
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTAAACGATCTTTGGTATCTG
GTTGACGTTGCCTGGCTACGTCAGTTAGCCTCTAAGCTTGAAACTTTTTG
GTTTACTGTTTGTCTGGTTCTGGCCTATAGGCATTCCATGAAGTATCTCA
TTTATTCCTCAAGGAACTTCTACTTTGTAGAGGAATATACTGAGGCTCAG
GGCTGTTGAAGTGTTTGATCACAGCAACTAGTGAGTAGAGAGGACTTTGA
CCTTGTCTAAAAAGATCCTGCATGCTCCAGTATCTGAAGGACTTGATGCA
TAGAAGCAACTGGAAGATGTCATTTCAAAGTCATTATTGTCAAGTTTCAA
ACAAGGACAAGACATGTTACACGGGGCTATTTTGGTGCAAAAGCAAACCA
TGTTCTATGGCTAGCAAATTATTTTAAGCCAACAGCAGAAGCAGAAATTT
CAATTATCCTTTAATGAAATTTGCACTTTGTTTCTGCTGGGGACTCATAC
AATTAAGTGCAGAAAAAGACATTAGGAATCATCCAGGCAGGCCAGCAAAC
TGGACAGATGAGACCCTACCAGGGCTTTTAGATGGTTGAGGTAAGTGTGG
TTCAGAAGGACAGCAGGACCTGAGTTTGGATTAGTGATACTTTTCCCCTC
ATACAGTGACAGTGCACAAGACACTCATCTCTGTAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_e16.g1 MSMg01no206_e16.g1 CHROMAT_FILE:
MSMg01no206_e16.g1 PHD_FILE: MSMg01no206_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:25 2005
         (634 letters)



>mm_chr8_75726807_75727841
          Length = 1035

 Score = 1114 bits (576), Expect = 0.0
 Identities = 609/620 (98%), Gaps = 1/620 (0%)
 Strand = Plus / Minus

                                                                        
Query: 16   ggtatctggttgacgttgcctggctacgtcagttagcctctaagcttgaaactttttggt 75
            |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1035 ggtatctggttgacattgcctggctacttcagttagcctctaagcttgaaactttttggt 976

                                                                        
Query: 76   ttactgtttgtctggttctggcctataggcattccatgaagtatctcatttattcctcaa 135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  ttactgtttgtctggttctggcctataggcattccatgaagtatctcatttattcctcaa 916

                                                                        
Query: 136  ggaacttctactttgtagaggaatatactgaggctcagggctgttgaagtgtttgatcac 195
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 915  ggaacttctactttgtagaggaatatactgaggctcagggctgttgaagtgtttgaccac 856

                                                                        
Query: 196  agcaactagtgagtagagaggactttgaccttgtctaaaaagatcctgcatgctccagta 255
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 855  agcaactagtgagtagagaggactttgaccttgtctaaaaagatcctgcatgctccggta 796

                                                                        
Query: 256  tctgaaggacttgatgcatagaagcaactggaagatgtcatttcaaagtcattattgtca 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  tctgaaggacttgatgcatagaagcaactggaagatgtcatttcaaagtcattattgtca 736

                                                                        
Query: 316  agtttcaaacaaggacaagacatgttacacggggctattttggtgcaaaagcaaaccatg 375
            ||||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||
Sbjct: 735  agtttcaaacaaggacaagacatgttatatggggctattttggtgcaaacgcagaccatg 676

                                                                        
Query: 376  ttctatggctagcaaattattttaagccaacagcagaagcagaaatttcaattat-cctt 434
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 675  ttctatggctagcaaattattttaagccaacagcagaagcagaaaattcaattattcctt 616

                                                                        
Query: 435  taatgaaatttgcactttgtttctgctggggactcatacaattaagtgcagaaaaagaca 494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  taatgaaatttgcactttgtttctgctggggactcatacaattaagtgcagaaaaagaca 556

                                                                        
Query: 495  ttaggaatcatccaggcaggccagcaaactggacagatgagaccctaccagggcttttag 554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  ttaggaatcatccaggcaggccagcaaactggacagatgagaccctaccagggcttttag 496

                                                                        
Query: 555  atggttgaggtaagtgtggttcagaaggacagcaggacctgagtttggattagtgatact 614
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495  atggttgaggtaaatgtggttcagaaggacagcaggacctgagtttggattagtgatact 436

                                
Query: 615  tttcccctcatacagtgaca 634
            ||||||||||||||||||||
Sbjct: 435  tttcccctcatacagtgaca 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1035
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1025
Effective search space:   639600
Effective search space used:   639600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)