Query= MSMg01no207_j07.b1 MSMg01no207_j07.b1 CHROMAT_FILE:
MSMg01no207_j07.b1 PHD_FILE: MSMg01no207_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:42 2005
(280 letters)
>mm_chr8_48149587_48150266
Length = 680
Score = 495 bits (256), Expect = e-144
Identities = 274/280 (97%)
Strand = Plus / Minus
Query: 1 tgcctacccagcatccaaaatagatccgagtgatggagatggtcataatgatcattatga 60
|||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 327 tgcctatcaagcatccaaaatagatccgagtgatggagatggtcataatgaccattatga 268
Query: 61 tagcccccatgagccaatggcaaagaaaggaaagatggttttctctgcttggacctctat 120
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 267 tagcatccatgagccaatggcaatgaaaggaaagatggttttctctgcttggacctctat 208
Query: 121 aagagacagggagtgggaacttgtagagcccacctccaacaggaagacagggtgtcaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 aagagacagggagtgggaacttgtagagcccacctccaacaggaagacagggtgtcaaat 148
Query: 181 gagggagggggttgccatcccacagtcaaaaccctgacccataattgttcctgtctgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gagggagggggttgccatcccacagtcaaaaccctgacccataattgttcctgtctgaaa 88
Query: 241 gaattacagggatgaaaacggagagaagcctgaggaaaag 280
||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 gaattacagggatgaaaacggagagaagcctgaggaaaag 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no207_j07.g1 MSMg01no207_j07.g1 CHROMAT_FILE:
MSMg01no207_j07.g1 PHD_FILE: MSMg01no207_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:42 2005
(382 letters)
>mm_chr8_48000037_48000818
Length = 782
Score = 667 bits (345), Expect = 0.0
Identities = 372/385 (96%), Gaps = 8/385 (2%)
Strand = Plus / Plus
Query: 2 cacaggctaagttaatttccctcggggccagggtttgaactgatccctggtcgctgacca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 202 cacaggctaagttaatttccctcggggccagggtttgaactgatccctggtcgctgaaga 261
Query: 62 gagcatgactctctgtcctaaattttgtgtggtgagaatattttcacctggccccc---- 117
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 262 gagcatgactctctgtcctaaattttgtgtggtgagaatattttcacctgg----caaaa 317
Query: 118 tgtttgcagctgactgctcttgaggagcactgggctttttcttttaatcaaaaaccttga 177
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgtttgcagctgactgcttttgaggagcactgggctttttcttttaatcaaaaaccttga 377
Query: 178 caggatttattgtttgtaaattgggaagaaggatttgaggctttaacacatgtaagtgat 237
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 378 caggatttattgtttgtaaattgggaagaaggatttgaggctttaacacacgtaagtgat 437
Query: 238 atgaaagggcaaaagaaaatgtgatttcttttccagttccagaatacatgccacagatgc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atgaaagggcaaaagaaaatgtgatttcttttccagttccagaatacatgccacagatgc 497
Query: 298 tcagtgacataagcagcctttttttataatacaatcttattttcttcttttcctatttct 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tctgtgacataagcagcctttttttataatacaatcttattttcttcttttcctatttct 557
Query: 358 tctctcagtcctttgtcatgtatga 382
|||||||||||||||||||||||||
Sbjct: 558 tctctcagtcctttgtcatgtatga 582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
