BAC Information

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BAC

Clone NameMSMg01-207J18
Chromosome8 (Build37)
Map Location 62,071,520 - 62,071,899
singlet/doubletsinglet
Overlap genenone
Upstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
Downstream geneAadat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207J18.T7 (MSMg01no207_j18.b1)MSMg01-207J18.TJ (MSMg01no207_j18.g1)
ACCAG390783AG390784
length1,2431,208
length of high quality
(start - end)
425 (29 - 453)382 (70 - 451)
definitionCHROMAT_FILE: MSMg01no207_j18.b1 PHD_FILE: MSMg01no207_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:45 2005CHROMAT_FILE: MSMg01no207_j18.g1 PHD_FILE: MSMg01no207_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGCATTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
CCCACTATTATTGTGTCGATTGCAATGTGTGCTTTGAGGTTTACTAAAGT
TTCTTTACCTGAATGTGGCTGCCCCCCGCCATTTGGAGCATAGATATTCA
GAATTGAGAGTTCCTCTTGGAGGATTTTACCTTCTGATGAGAATGAAGTG
CCCCTCCTTGTCTTTTTTGATGACTTTGGGTTGGAAGTCAATCTTATCAG
ATATTAGGATGGCTACTCCAGCTTGTTTCTTCATACCCTTTGCTTGGAAA
ATTGTTTTCCAGCCTTTTATTCTGAGGTAGTGTCTATCTTTTTCTCTGAG
ATGTGTATCCTGTAAACAGCAAAATATTGGGTCTTGTTTGTGTAGCCAGT
TTGTTAGTCTATGTCTTTTTATTCGGGAGTTGAGACCATTGATGTTAAGA
GATATTATTGACAAGTAATTGTTGCTTCCTGTTATTTTTGTTGATAAAGT
TGGCATTCTGTTCTTGTGGCTGTCTTCTTTTAGGTTTGTTGAGGGATTAC
CTTCTTGTTTTTTCTAGGGCATTGTTCCCGTTCTTGTATTGGTTTTTTTC
TGTTATTATCCTTTTTTTTTTTGATCTCTCTGTTATTTTCTGTCCTTCTT
TGTTTTCTTCTTTCATTTTTTTTCTTTTTTCTTTTTTTTTTTTCTCTTCT
CTTTTTTTTCTTCTCTTTTTTTTTCTTTTTTATTTCCATTCTTTATTCTT
TATTTTTCCTTCTCTTTATTTCTTTTCTATTTTTCTTTTTTTTTCTTTTT
TTCTTTTTCTTTTTTCCTTATATTTCCTTTTTTCTTTTAATTTTTTTTTT
TTTTTCCATCTTTTTCACTTTTTTCTTTCTTTTTCTTTTTTTTCATATTA
CTTTCTTCTTTTATTTTGTTTCTTTTCTTCTTTTTTTTCTTTCATTTTTT
TTTCTTTTCTACTTCCTTTCTTTTCTTTTTTTTTTTTACTTTTTTTTTTA
TTTCTTTTTTTCTTCCTTTCTTTTTTTTTTTTTTTTTCTTATTTTTTTTT
ACTTTTTATTTTTCTTTTTCTTTTTCTATTTTATTTCTTTTCTTTATTTT
CTTCTTTCTTTTTATTATTTATTTATCTTTTTTATCTACTTATTTCTTTC
TTTTTCTTTTCCTTTCATTCTTCCTTCCTCTTCTTTTTTTCTTCTCTCTT
TACTTTTATTGTTTTTTTTCTTTCTTATAACTTTTTCTTTATC
TTTTTATGTATGGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTAGTAGAAATGATTTAGTTAAAAAGGTCA
ATTTTAAGTATTTATTTGTAGTGACCCCGATGTATACAATTTTACAAGTT
CACAAAATAAATATATAATCCAGCATTTATATTGCCTTAAACTCTATTTT
CACTTTTATATTTATATTGGCTTTAAATAACCTCATTCAAAATTCAAAAC
TGTAGTACCATTAGAGATATTGACACAATCACTACTTTTAATGTGATATA
CTTTTAATAAAAAATGACAACACTTTTAAGGAGGTATTTGGAAATATTCT
CTGTAAACTATTTGGGACATAGTATTTTATGTTAGTCTGTTAGTATTAAT
AATCATTATGTGTCTTAGTTTGATCACTTAAGACCGGTACTAAACACTAT
TTTTTTTAAACTCACAGCTAGTAGCTATTATTCATAAACAACATAGTAAC
ATGCTGTGGTATAGCTAGCTGATGTTCTCAACTGAAACTGCATTTAATGG
TGTCATATCGAAAATTAGAAATCCATTGTTATGTGTTGATTTTGTTGTGG
AAATAAGTAAATGCTATAAACCAAAACTATAAAGTAGAAGTAAAGAAGAG
ACAGAATTCATCTCTACATGTTTATCACTGCCATGTCAGGTCAAACAAAG
AAAATGAAAATTTACATCAATTTAGACCATGTCTAATTGTCCTGAGATGT
AATACTACTGAGATGTAGTATGCCACTATCACTTAATATCCATATTTATT
GTATAATTGGTCACTTTGTCATTTGCGTGACTCTGAAACACCCCCTGTAA
GTTTAATGTTTTAATGTTTGCATCTGAACTTATATATTTGTTCTGAATTT
TCCCCTGTTCTTTATTATTTTTGTTTTTACTTTAATATTCTTTCTTTTTG
TTACCCCTTTTCTTACAATATTATATCTTTTTTTTCTTATAATTTTATCT
TCTTTTATTTTCCTTTTTTTTCTTATTTTTTCTTTTTCTTTTTTTTCTTT
TTTATATTCTATTTTTTCTTTTTTTTCTTTTTATCTCATTTCTTTTTTTT
ATAACTTTCCTCTTTTCTTTTATCTTCTTTCTCTTCTTTTCTTCTATATT
CTTTCTCATATCTTCATCTTTCNTTTACTTATTCTACTCTTCTTCTTTAT
CATCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_j18.g1 MSMg01no207_j18.g1 CHROMAT_FILE:
MSMg01no207_j18.g1 PHD_FILE: MSMg01no207_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:45 2005
         (382 letters)



>mm_chr8_62071320_62072101
          Length = 782

 Score =  681 bits (352), Expect = 0.0
 Identities = 373/384 (97%), Gaps = 8/384 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagtagaaatgatttagttaaaaaggtcaattttaagtatttatttgtagtgacccc- 59
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 201 tgtagcagaaatgatttagttaaaaaggtcaattttaagtatttatttgtagtga----t 256

                                                                       
Query: 60  ---gatgtatacaattttacaagttcacaaaataaatatataatccagcatttatattgc 116
              |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 257 tatgatgtatacaattttacaagttcacaaaataagtatataatccagcatttatattgc 316

                                                                       
Query: 117 cttaaactctattttcacttttatatttatattggctttaaataacctcattcaaaattc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttaaactctattttcacttttatatttatattggctttaaataacctcattcaaaattc 376

                                                                       
Query: 177 aaaactgtagtaccattagagatattgacacaatcactacttttaatgtgatatactttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaactgtagtaccattagagatattgacacaatcactacttttaatgtgatatactttt 436

                                                                       
Query: 237 aataaaaaatgacaacacttttaaggaggtatttggaaatattctctgtaaactatttgg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aataaaaaatgacaacacttttaaggaggtatttggaaatattctctgtaaactatttgg 496

                                                                       
Query: 297 gacatagtattttatgttagtctgttagtattaataatcattatgtgtcttagtttgatc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 497 gacatagtattttatgttagtctgttagtattaataatcattatgtgtcttagtttgatt 556

                                   
Query: 357 acttaagaccggtactaaacacta 380
           ||||||||||||||||||||||||
Sbjct: 557 acttaagaccggtactaaacacta 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)