Query= MSMg01no208_l21.b1 MSMg01no208_l21.b1 CHROMAT_FILE:
MSMg01no208_l21.b1 PHD_FILE: MSMg01no208_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:39 2005
(314 letters)
>mm_chr8_19349943_19350656
Length = 714
Score = 286 bits (148), Expect = 1e-81
Identities = 285/354 (80%), Gaps = 48/354 (13%)
Strand = Plus / Plus
Query: 4 ggaattcaaggcat----------atagtaaaatcaatatacagtaaa-ccagaggtcaa 52
|||||||||||||| ||||||||||||||||||| ||| ||| |||||||
Sbjct: 193 ggaattcaaggcatttacataaacatagtaaaatcaatatacaacaaaccca-aggtcaa 251
Query: 53 catcaaa-aaacattgagaagaatatattttctatgcagaaaacttcttcatatactgta 111
||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 252 catcaaagaaatattgagaagaatatattttctatgcagaaaacttctttatatactgaa 311
Query: 112 attgcacatgtcc-atgactccattgtgctctggcaggtacaccacaatgaagtacttta 170
||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 312 attgcacatttcccatgactccagtgtgctctgccaggtacaccacaatgaagtacttta 371
Query: 171 cagcacttgaaggcttattgcagcttggaagagatatc-caagataaataatgaagtcag 229
|||||| ||||||||| |||| ||||||| | || | |||||||||||| ||||||||
Sbjct: 372 aagcactggaaggcttaatgcatcttggaa-a-atttttcaagataaataaagaagtcag 429
Query: 230 tagacagtt----------------------aca-gc------atgctgaaagtcaggct 260
||||||||| ||| || |||||||||||| ||||
Sbjct: 430 tagacagttctcttgcagccttagtctccagacatgctacaccatgctgaaagtcgggct 489
Query: 261 ctaaatcac-ctcatctcttaaagggaatactatgtcctgaggaaaggacagca 313
||| ||||| | |||||||||||||||| |||||||||| | ||||| ||||||
Sbjct: 490 ctatatcacac-catctcttaaagggaaaactatgtcctaaagaaagtacagca 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no208_l21.g1 MSMg01no208_l21.g1 CHROMAT_FILE:
MSMg01no208_l21.g1 PHD_FILE: MSMg01no208_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:39 2005
(290 letters)
>mm_chr8_19442370_19443059
Length = 690
Score = 346 bits (179), Expect = e-100
Identities = 242/263 (92%), Gaps = 2/263 (0%)
Strand = Plus / Minus
Query: 17 gttgtataataggcataattttagtgtctattgtttt-tagtgtctttatatctaacatt 75
|||||||| |||||||||||||||||||||||||||| | ||| ||||||| |||||| |
Sbjct: 478 gttgtatagtaggcataattttagtgtctattgttttct-gtgcctttatacctaacact 420
Query: 76 ggattatttcatcattaaaaaggtatcaaccaggagacattgacttacagacttgtgtta 135
||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 419 ggaacatttcttcattaaaaaggtatcaaccaggagacattgacttaaagacttgtgtta 360
Query: 136 caagatgaagctcatctttaagttttgtaaaggaagcagacaagcagtaaacacataatc 195
|| ||||||||||||||||| ||||||||||||||||||||| |||||||| | ||| |
Sbjct: 359 caggatgaagctcatctttatcttttgtaaaggaagcagacaaacagtaaactcctaacc 300
Query: 196 tgccttcttattacatgggaattataaatacagtgtcttcaatttgctttcttctcaagg 255
||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 299 tgctttcttattacatgggaattatgaatactgtgtcttcaatttgctttcttctcaagg 240
Query: 256 tcccctgtaactttgattttttt 278
|||||||||||||| ||||||||
Sbjct: 239 tcccctgtaactttaattttttt 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
