BAC Information

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BAC

Clone NameMSMg01-209A06
Chromosome8 (Build37)
Map Location 44,374,040 - 44,374,348
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628212, Triml1, LOC622082, EG622117, LOC100039417
Downstream geneZfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209A06.T7 (MSMg01no209_a06.b1)MSMg01-209A06.TJ (MSMg01no209_a06.g1)
ACCAG391708AG391709
length698810
length of high quality
(start - end)
317 (4 - 320)282 (134 - 415)
definitionCHROMAT_FILE: MSMg01no209_a06.b1 PHD_FILE: MSMg01no209_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:00 2005CHROMAT_FILE: MSMg01no209_a06.g1 PHD_FILE: MSMg01no209_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGGATCCGCGGAATTCATAGACAGTGGGCCTGTGCACAGAGGAGAATAA
TGGAAGATTTTTCAGTTTACTTTAGACAGTATCTATGTATCTAACCCATG
TCTTTGAGTACAAATCACAGAACTATAAGGCAGAGATTGAACTTCAAATA
ATGGCCCTAAATAAAGTCAATATATTGATATTATCTGCTGTTATATAACT
AACCCCCAAATTTAAACATCTGGAAAAGCCATTTTATTTTGTCACTTAGT
GAGTTTGAAATTTCACAAAGGACCATTCAATTTGTCTCTCAAGACAGACC
AGGATACCTCCTGTGCTGGTGATATGTGACCCTCCCCCCCGCCTCCTTAC
CTCATGTTTGGTACCCCTGGCTGTCTAGCTTCTGTCATCTTCTCCTACAC
ACGTCTTATCCAGGCAAGGTCTCAGACTTCATCCAGGATGTTATTCTTAA
GTGTTTCAAGTGAGAATAGCTACTCAGGCTCTTATACACTAAGGGTAGCA
GGGTAGGCAGACTTTATAGCTTTACAAATACTAATAGTCCTAGATTGATA
ATTTTTCATTGTATAAGCATATGGTACAAAGTGATGTAATAATTTATGAA
TATGATGTGGGGCTGATTAATTTAACCTGGTTGACCTATATATCCCAAGG
CCTAAACTCCTTTTTTTTTTAAATTTCCATTTTCATTTTCCCATGGGN
ATAATTTCCAAGANAAATGACATTTATTTTCGCTCTCTGTTTTTTTTTTN
TNNCCCTCTATGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGCTGGAGAGATGG
CTCTGGGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCATGAGTTCAAAT
CGCAGTAACCACATGGTGGCTCACAACCATCTGTAATGAAATCTAATGCC
CTCTTTTGTTGTGTCTGTAGACAGCTACAGTGTACTTATGTAAACTTATT
TATAAAATAAATAAATAAATAAATCTTTTTTAAAAACTTGAATTCTCAAA
TAACTATTTTAAAGAGGAAGAAACAGATGAAGTGCCATATTCAACCAACT
AAAATGGCCTTTGATATTTTTTTTCATCCCCCCCCCCCCCAATGATATGC
ATTGTCATATATTCTTAGCAAACCCCTCCCAAATAAAGATTTTCCTAGAA
GATTATCTGGGAGTAATATGCCAAAGTCATTGTGTGAGCTGTATTTTCTT
ATTTGAATTTTTCTATGCTTTCTTTGGTGTGCAATAGTATTTATTAATCG
TACACTAAAATAAATTTTAAAAAAGAGACCAAGTTGACAGGTTTCCTTAT
GGCCTCGCCAAGCATTCCAATCAATGCCTGCACCAATATTTGTGTCGCGT
CTGTGTTGTTTCCGCCCGCTGCTTTCTTTCCTACTCTTATTTTTCCTTAT
CTCCGGTATTCACACCTTTCCCCCCTACCCGCTTATATCCGATTTTTTTC
TACGGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_a06.b1 MSMg01no209_a06.b1 CHROMAT_FILE:
MSMg01no209_a06.b1 PHD_FILE: MSMg01no209_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:00 2005
         (317 letters)



>mm_chr8_44373832_44374548
          Length = 717

 Score =  598 bits (309), Expect = e-175
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattcatagacagtgggcctgtgcacagaggagaataatggaagatttttcagtttact 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcatagacagtgggcctgtgcacagaggagaataatggaagatttttcagtttact 268

                                                                       
Query: 69  ttagacagtatctatgtatctaacccatgtctttgagtacaaatcacagaactataaggc 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttagacagtatctatgtatctaacccatgtctttgagtacaaatcacagaactataaggc 328

                                                                       
Query: 129 agagattgaacttcaaataatggccctaaataaagtcaatatattgatattatctgctgt 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agagattgaacttcaaataatggccctaaataaagtcaatatattgatattatctgctgt 388

                                                                       
Query: 189 tatataactaacccccaaatttaaacatctggaaaagccattttattttgtcacttagtg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tatataactaacccccaaatttaaacatctggaaaagccattttattttgtcacttagtg 448

                                                                       
Query: 249 agtttgaaatttcacaaaggaccattcaatttgtctctcaagacagaccaggatacctcc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agtttgaaatttcacaaaggaccattcaatttgtctctcaagacagaccaggatacctcc 508

                    
Query: 309 tgtgctggt 317
           |||||||||
Sbjct: 509 tgtgctggt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)