BAC Information

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BAC

Clone NameMSMg01-209N11
Chromosome8 (Build37)
Map Location 127,724,021 - 127,781,854
singlet/doubletdoublet
Overlap geneDisc1
Upstream geneGalnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax
Downstream geneSipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209N11.T7 (MSMg01no209_n11.b1)MSMg01-209N11.TJ (MSMg01no209_n11.g1)
ACCAG392209AG392210
length697706
length of high quality
(start - end)
161 (65 - 225)190 (107 - 296)
definitionCHROMAT_FILE: MSMg01no209_n11.b1 PHD_FILE: MSMg01no209_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:07 2005CHROMAT_FILE: MSMg01no209_n11.g1 PHD_FILE: MSMg01no209_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,724,021 - 127,724,177)(127,781,665 - 127,781,854)
sequence
CTCATTATTTCGGAGGCGCCGCGGNAATCTCTCTTTTACGNTATGAACTG
TGNGNNTGTGTGNCCACATGAGATGATTGCTCACGCTGATGTCGCTCCCA
TTTGGACATCCTTAGTTTTCTTGTGCAGGTAAAAACACGGATCTGAAGCC
GGGGAACATATCTGCTCAATGGGCCTGTGTGTGTTTGGCTCTCTACTGGT
CTTATCTCAAAAACTCTGTTCTTCCTCTGTTCCCTGGTAGTACCATCTGC
CCTGTGGCTGGGGTACATGGAACTGCCAGGTCCATGACTTTTAGTCAATC
TCCACCTGCTGCTGCTGCTGTGATGACTGACATTCTTTCACCCCCCCGCC
TGCGTTTGCTGGGCCTTCTAATCCAGATGAGTGACTTAGGCCACGACTGG
TTCCTAACTGAATAGTCATGGATCGGCTGCTGTCTGCTTCTATCACGGTC
TGTTCATGTCCCTGGCTCAAGCTCATTCCTCCGCATCCTGTCATATATCT
CGCCTCATCCCTTTTGAGCCCTTATTAAATTGTTTTATTAATTATGCTCA
CTCTGCACTCCCTAGAATACTTCCGTGTAACAATGTGTGAAATGTACTTT
AATGCCTCTTGCCCGCTGCTCCTTTTTTTTTTTTTTTGAGCATATTCCCG
CCGCCCCCCTTTTCCCTTTCCTCCCCCGTTATCATCTTATTCCCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCGAA
AAATTCTCTCTTTTCTTTTCTCATTTAAAAGATTGGCTGTTGCTTATTTT
CTACTGGGTATCAGATGTCCCCCTTAGCCTCCAGCAGCCCAGAATTGGCT
CTTGGTGGGGTCTAAACACCTAGAGGGGGGCAGAGAGCCAACATAAAGTC
ATGTGGATGGCTTGTTGGCCATGCTGAGAGTTTTTGAGAGATGGCAGACC
GGAGGCCTAGCCGAGTGTTCTGGCTGTCCCGCAGAGGATCATTAAAGTGT
TTTTTTTTACTAANGAGGACCTTTGAGGGCGAGAAATATTTTATACTCTC
ANGGCGAAACCCGCTGAGAATATCTCCCTGANAACTGANCTGAGCNNACA
AAACNGAAGCAAACTGCCAGGTGCTGAGAGAAGCCTCCAGGATGGTGGGG
TTTGGGGGAGGGCGCCATCCTTTATTTTTTTTTTTTTCCCCGCCCCCCTT
TACCTCCCCCCGCCGCCTTTTTGTTTTTTCCTCCATTTTCCTCTTTTTTC
CTCTCCCTTCCGCCTTTTTTTTACCCCTTTTTCTATTCCCCTTTTTACCG
TTTCCCGCTCCTTCCCTCTTATCCTTTCTTTTTTTCTTTTTTTTTTCCCC
CTTTTACCCCTCCTTCTCCCCTTTTCTCCTTTTTTTTTTCCTCTCACTCC
CCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_n11.b1 MSMg01no209_n11.b1 CHROMAT_FILE:
MSMg01no209_n11.b1 PHD_FILE: MSMg01no209_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:07 2005
         (161 letters)



>mm_chr8_127723817_127724377
          Length = 561

 Score =  296 bits (153), Expect = 5e-85
 Identities = 156/157 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgagatgattgctcacgctgatgtcgctcccatttggacatccttagttttcttgtgcag 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgagatgattgttcacgctgatgtcgctcccatttggacatccttagttttcttgtgcag 264

                                                                       
Query: 65  gtaaaaacacggatctgaagccggggaacatatctgctcaatgggcctgtgtgtgtttgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaaaaacacggatctgaagccggggaacatatctgctcaatgggcctgtgtgtgtttgg 324

                                                
Query: 125 ctctctactggtcttatctcaaaaactctgttcttcc 161
           |||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctctactggtcttatctcaaaaactctgttcttcc 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no209_n11.g1 MSMg01no209_n11.g1 CHROMAT_FILE:
MSMg01no209_n11.g1 PHD_FILE: MSMg01no209_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:07 2005
         (190 letters)



>mm_chr8_127781465_127782054
          Length = 590

 Score =  337 bits (174), Expect = 3e-97
 Identities = 186/190 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtatcagatgtcccccttagcctccagcagcccagaattggctcttggtggggtctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggtatcagatgtcccccttagcctccagcagcccagaattggctcttggtggggtctaaa 331

                                                                       
Query: 61  cacctagaggggggcagagagccaacataaagtcatgtggatggcttgttggccatgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cacctagaggggggcagagagccaacataaagtcatgtggatggcttgttggccatgctg 271

                                                                       
Query: 121 agagtttttgagagatggcagaccggaggcctagccgagtgttctggctgtcccgcagag 180
           ||||||   |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 270 agagttccagagagatggcagaccggaggcctagccgagtgttctggctgtccagcagag 211

                     
Query: 181 gatcattaaa 190
           ||||||||||
Sbjct: 210 gatcattaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)