BAC Information

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BAC

Clone NameMSMg01-210D03
Chromosome8 (Build37)
Map Location 117,282,774 - 117,282,988
singlet/doubletsinglet
Overlap geneWwox
Upstream geneAdamts18, Nudt7, AI427515, Clec3a
Downstream geneMaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210D03.T7 (MSMg01no210_d03.b1)MSMg01-210D03.TJ (MSMg01no210_d03.g1)
ACCAG392408
length733702
length of high quality
(start - end)
---215 (132 - 346)
definitionCHROMAT_FILE: MSMg01no210_d03.b1 PHD_FILE: MSMg01no210_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:38 2005CHROMAT_FILE: MSMg01no210_d03.g1 PHD_FILE: MSMg01no210_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAAGGCTTGTATTTCTAG
AAAGTTCTGATCACCTAGTCTCCCTCTTCCCAGTAAAGCAGAATAGAGGT
GACCATAAGCTAAGGTCTGGAGCTGAGGGTTATCGCAGAAGGAAGGGGAC
ACAACGTGACATTGGAATGGTCTAAGCTGGCCTTGGAAACCCCTACAGCT
TGCTGGCCTCACAGTGCCAGCTGGAATACTTGCCTCTTGCTGATGATTTC
CACCCCCCGCCACCTTGGTGTGGGTAACAATTGGGGAGGGGGGTGCCGGC
CCCGACAGATAAAGAAACAATTTTAGCGTTTATATTCCACTGGGGTAAGC
ACTAACAAAGACCCACCATTTCCCAGATAACCAATTCTTTTAAAAGAACA
TCTGTTGAAACTGGCAATTTACAATCTTCTTAAAATACTGAGCGACTTAC
TTAACCCTCCAGGGAGACTAATATTAGTTTATTAGAGACTATTTCTACTT
CTGTCTATTTCCTTACCTAAATGACTTGTTTAGACCCTTGGGATAATGGC
TTTGGTTTTTTTCCTCCCCTCTTCTCATTCATCATTTATCCCTTCTTTAT
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_d03.g1 MSMg01no210_d03.g1 CHROMAT_FILE:
MSMg01no210_d03.g1 PHD_FILE: MSMg01no210_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:38 2005
         (215 letters)



>mm_chr8_117282574_117283188
          Length = 615

 Score =  385 bits (199), Expect = e-111
 Identities = 211/215 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaggcttgtatttctagaaagttctgatcacctagtctccctcttcccagtaaagcag 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 gcaaggcttgtatttctagaaagttctgatcacctagtcttcctcttcccagtaaagcag 260

                                                                       
Query: 61  aatagaggtgaccataagctaaggtctggagctgagggttatcgcagaaggaaggggaca 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 aatagagatgaccataagctaaggtctggagctgagggttatcgcagaaggaaggggacg 320

                                                                       
Query: 121 caacgtgacattggaatggtctaagctggccttggaaacccctacagcttgctggcctca 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacgtgatattggaatggtctaagctggccttggaaacccctacagcttgctggcctca 380

                                              
Query: 181 cagtgccagctggaatacttgcctcttgctgatga 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgccagctggaatacttgcctcttgctgatga 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)