BAC Information

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BAC

Clone NameMSMg01-210F17
Chromosome8 (Build37)
Map Location 50,362,258 - 50,362,545
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz3, 2900073C17Rik, LOC100039866
Downstream gene4930555F03Rik, LOC100039919, EG667495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210F17.T7 (MSMg01no210_f17.b1)MSMg01-210F17.TJ (MSMg01no210_f17.g1)
ACCAG392509AG392510
length763771
length of high quality
(start - end)
299 (46 - 344)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no210_f17.b1 PHD_FILE: MSMg01no210_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:51 2005CHROMAT_FILE: MSMg01no210_f17.g1 PHD_FILE: MSMg01no210_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAAAGTCCTTAACTGTAAGCCATAATATATGTCAAAGATGCAG
TGCAGACCCAAATAGGCCCTGTTCATGCTTCCTGGATCTCTTTGAGTTCA
AATATGCTTGGATCTTGTTGATGTAGAGGGCCTTTCTTTTCTTGATATCC
TTAGTTTCTTCTGCCCCCCCCCTTTCTTGGGATTACTTGAACCCTGACTG
GAGGGATTTTGTAGAGGCATCCTATTTGGGGCTAAGCAGTCGAAGTTGTT
TTGTTCTCTGCACAATGTCTGTCTTTTGGTCTCTGCATTTTTTCCATCTG
TGGCAAGGATTTTTTTTTTCACCACCCCCCCCCTAACTACTATTTAAGAT
GGTGGTTAAGTGATATCCCCCCTGCTAAAAAAATAATACTGAGCGTAGGA
CATGCTTTACCTTTTGAGATCGGAAAGCCAGTGACTAGAGATATACGTTC
AACAGTATATCTCCATACTTCCACAACATATGGATATGATAGATGCTGTA
TCCCATGGCTTATTCCCCGTTTGTACGTACACTGTACCGAGCATAATCCT
TTTTATTGATTTCTACATCCTATTTTCATGTATGCCTACCTGTTCCGTGG
ACTATTCTCCGTATTATTGTTTCCTGTGCCCTCATACCCTTTTCTCCCTT
CCTTTTTTCATTTTTTTTTTTCTCTTTTCATACCCCCCACCCCCCTTCTA
TACTTTTCTTCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTCTTTGGGATTTAGCTTCT
ATCCCTTTACTGACTAGAGAGCATACTATGAAAAGGAGGAGAAAATGACA
CATCAGTGGGGAAGCAGTGTTTCACAGTGAAGGTTTGATAGCTACCATGT
GTCTTTCTTCTTATCAGTGGTTATCCTTAGGAAAGGTTAAGAGACTTTAC
TTACAACACTAAGGTAACACAATTGCTTACTCAGCGAACACATGCACTTA
GATATTCAAAATAATAGGCTGGTGTAAAATACACTGTCAGGACTTGGTAG
TGCAGATGTAGGGGTTTGTTGCTGCCCCCCCCCCCCCCNNNNTTNNTTTT
TTTCTTTTTTTTTTTTTTCCCCCCCCCCAAAAACAAAAAAAACTTTTGGT
GCGTTGTCTTTCTTCTTTCTCTTTTTTTCTCTCCCTTCCCTTCCCTCTAC
TTCTTTCCTCTTTTTTCCCTATTACTTTTCCCTCTTCTTTCCCTTTTCTT
TTTTGTATTCCCCTTTTCTTTTTTCATACTTCCCCCTTTCCTCTTCCTTA
TTTCACTTTTCTTCCTTTCTTCTCTCCTTATCTCCTCCTTCTCCCCTCCC
TTCCTTCCCCCTTTTTTCTTTTCTGTCTTGTTCCGCCTTTTTCCCCCATC
CCCCCTTTTTCTTCCTCTCCACCCCCCTCTCCCTTGCCCTTTCCTCTTCT
TCGCCTCACTCTCTTTTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_f17.g1 MSMg01no210_f17.g1 CHROMAT_FILE:
MSMg01no210_f17.g1 PHD_FILE: MSMg01no210_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:52 2005
         (291 letters)



>mm_chr8_50362058_50362748
          Length = 691

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttctttgggatttagcttctatccctttactgactagagagcatactatgaaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 actcttctttgggatttagcttctatccctttactgactagagagcatactatgaaaagg 429

                                                                       
Query: 61  aggagaaaatgacacatcagtggggaagcagtgtttcacagtgaaggtttgatagctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggagaaaatgacacatcagtggggaagcagtgtttcacagtgaaggtttgatagctacc 369

                                                                       
Query: 121 atgtgtctttcttcttatcagtggttatccttaggaaaggttaagagactttacttacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atgtgtctttcttcttatcagtggttatccttaggaaaggttaagagactttacttacaa 309

                                                                       
Query: 181 cactaaggtaacacaattgcttactcagcgaacacatgcacttagatattcaaaataata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cactaaggtaacacaattgcttactcagcgaacacatgcacttagatattcaaaataata 249

                                                           
Query: 241 ggctggtgtaaaatacactgtcaggacttggtagtgcagatgtagggg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggctggtgtaaaatacactgtcaggacttggtagtgcagatgtagggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)