BAC Information

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BAC

Clone NameMSMg01-210N13
Chromosome8 (Build37)
Map Location 50,362,263 - 50,362,492
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz3, 2900073C17Rik, LOC100039866
Downstream gene4930555F03Rik, LOC100039919, EG667495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210N13.T7 (MSMg01no210_n13.b1)MSMg01-210N13.TJ (MSMg01no210_n13.g1)
ACCAG392810AG392811
length794799
length of high quality
(start - end)
73 (230 - 302)230 (180 - 409)
definitionCHROMAT_FILE: MSMg01no210_n13.b1 PHD_FILE: MSMg01no210_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:32 2005CHROMAT_FILE: MSMg01no210_n13.g1 PHD_FILE: MSMg01no210_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCCTTTCGGGTGTTCTCTTCTTGGTTTTGTCTTCGGGGTTTCCNNTT
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATAAACTCCTTACCTGTAAGCCATAATATCTGTCAAAGATGCA
GTGCAGACCCTAATAGGCCCTGTTCATGCTTCCTGGATCTCTTTGAGTTC
AAATCTGCTTGTATCTTGTTGATGTAGAGGGCCTTTCTTTTCTTGATATC
CTTAGTTTCTTCTGCCCCCCCCCTTTCTTGGGATTACTTGAACCCTGACT
GTAGGNATTTTGTACAGTCATCCTATTTGGGGCTAATCAGTCCAAGTTGT
TTTGTTCTCTAGACAGTGTCTGTCTTTTGGTCTCTGCATTTTTTCCATCT
GTGGCTTTTACTATTTTCCCCCCCCCCCCATTTATTTACGATTTAAGATG
GTGGTTAAGTTATATTTCCAATGAAAAACAAATGCTGTACAGTTAGACTC
ATGATTTAACTTTTGAGACTGGCATGTCAGGACTTCTGCTATACTTTTAA
NCATAGTCTCCAATCTTCCTCAACACCTCAGATATATAGTGTATATATCT
GACCGCTTAGGTACACTTGACAGAACTACTCAAGTAGCACTAAAAATTTA
GGAAACCCCTACATAGACTTCCCTGAATCCAACTGTTATAGTGTTTAACA
ATATGATTAAATCGTGTTCGGCCAACATGCGTTCTTTGTTCTAGGAGATT
CTGAAAAATTTCGCTATCATCTCTCTGATGATATTATTTTCCCG
TTGTTTATCGGGCCATCCCTGGCGGTCAGTTCTCTTNTATTNCCCNNCCA
ACTATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTCTTTGGGATTTAGCTTCT
ATCCCTTTACTGACTAGATTTCCCCCTATGAAAAGGAGGAGAAAATGACA
CATCAGTGGGGAAGCAGTGTTTCACAGTGAAGGTTTGATAGCTACCATGT
GTCTTTCTTCTTATCAGTGGTTATCCTTAGGAAAGGTTAAGAGACTTTAC
TTACAACACTAAGGTAACACAATTGCTTACTCAGCGAACACATGCACTTA
GATATTCAAAATAATATGCTGGTGTAAAATACCTTGTCAGGACTTGGAAT
TGCAGATGTATGTTTATGTCGCCGCGCCCACCGAAGAGTAGTTTTGATTC
TTTTGGAAAGATTGTCTCATGCGTATTGAATTCAGCAATGCGAAAGATAA
TGTGATTCCCAGGCACACAAACAGCAAGATAGTCTAGTTGATCGGCTCAT
TAAAGTAGCTGGAAACATCTGCTTAACTCGTTCATAAAACTAAAATTCAG
GGACTGATGTGTTAGTTATCTACAGTGTTAGCAAATTACTGTATCTCACC
CTTGAAGCTTGTGTCTTCATACTCACTTATATACATACCTAAAGCTCACA
TATATACACACTATACCAAAACATATTACTCAGATTTCTTCCCCCTTCTC
ACCCAACATACCGCTATATTCCATAGAAAATACACCTTTGTATTAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_n13.g1 MSMg01no210_n13.g1 CHROMAT_FILE:
MSMg01no210_n13.g1 PHD_FILE: MSMg01no210_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:32 2005
         (230 letters)



>mm_chr8_50362063_50362692
          Length = 630

 Score =  408 bits (211), Expect = e-118
 Identities = 226/231 (97%), Gaps = 2/231 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaaggaggagaaaatgacacatcagtggggaagcagtgtttcacagtgaaggtttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gaaaaggaggagaaaatgacacatcagtggggaagcagtgtttcacagtgaaggtttgat 371

                                                                       
Query: 61  agctaccatgtgtctttcttcttatcagtggttatccttaggaaaggttaagagacttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agctaccatgtgtctttcttcttatcagtggttatccttaggaaaggttaagagacttta 311

                                                                       
Query: 121 cttacaacactaaggtaacacaattgcttactcagcgaacacatgcacttagatattcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cttacaacactaaggtaacacaattgcttactcagcgaacacatgcacttagatattcaa 251

                                                              
Query: 181 aataatatgctggtgtaaaatac-cttgtcaggacttggaattgcagatgt 230
           ||||||| ||||||||||||||| || |||||||||||| | |||||||||
Sbjct: 250 aataataggctggtgtaaaatacact-gtcaggacttggtagtgcagatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)