BAC Information

Click to search

BAC

Clone NameMSMg01-212H19
Chromosome8 (Build37)
Map Location 3,191,323 - 3,191,660
singlet/doubletsinglet
Overlap geneInsr
Upstream geneEG664801, EG209786, D630014A15Rik
Downstream geneA430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212H19.T7 (MSMg01no212_h19.b1)MSMg01-212H19.TJ (MSMg01no212_h19.g1)
ACCAG393824AG393825
length753734
length of high quality
(start - end)
339 (76 - 414)248 (430 - 677)
definitionCHROMAT_FILE: MSMg01no212_h19.b1 PHD_FILE: MSMg01no212_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:16 2005CHROMAT_FILE: MSMg01no212_h19.g1 PHD_FILE: MSMg01no212_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGC
GGAATTCACTTCTTAACAGACAGGTCTCATTGTGTAGTCCTGCTTGACCT
AGTAGTCACTACATAGACTAGGCCAGGCTTGAACTCACAGAAATCCATCT
ACCTCTGCCTCCCAATGGCAGAACTAGTGTACCACCACACTAAGACTCTC
CCCTCTCAAAGACAGAGATTGAAGACAATCCTTTGTGGATAATTTTAGCT
GTTCTGAGTTCAAGAATGTGTGTGCTACAGGTGTATGTGTTATATGTGTG
GTATGTGTCCACTCTATGTGTATACATGTGTGTGTATATGTATGTGCACC
TATATAGTGTGTGCAATGTATGTATGTGTGCATATATATTGTTACATGTG
TGCATGTGTGCTTAACCCCCCTCTATATGTTTCATGTGGTATGTGAGCAT
GTCATATGTGCCAAGTGTGTACACACATATGTGCTACATGTTGTGACTGT
GTTACATGTAGTGTCTGCGTGAGTATTATATATAGGATGTGCGGTATATG
CGTAATTTATCCCTCTATCCACCCGTTTTTTTAAATAAAACACAATCACA
CATCTCATTTCTTTTTTTCTATCCATTTTTCTCTCTCTATCTCTTTCAAT
CTTTTTTTTTCCTTTACTATTCAATATTCATATATTTACCATTATCTCTT
CATCTTTACTTTTAACTTAATGATTTAATAATTTTCTTTACTTACCTATT
TAA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCTAGCCTCTACCTTTGTAA
AACTGTTCCAAAGCAGATTTTATTCCAATTCTTTCCCTTAGTTTGGCACT
GACTGATTATTGGTGACTCTTGAGTTAATCATTAATGTGTTTTCCTTTAC
CAACTGAGTATCACTCCAGTCCATGGAGTCCATTTGAATGTCCTAAGTGG
CTGCCTGAAACCATGGCAATAGCTGCTGCATACAAACTTTCCCCCAGGCT
CACATACCTATGATGAAGTTCAATTAGACATAGTCAGAGATCGACAAGTG
TAGCCAGTAATATTTTTTAACAACCCCTGCCGAGCATGGAGCTGCATGGC
TGTAATCTCAGCATTTGCCCCACCTAGGCAAGAGGATCAGGATGGGTTTG
GAGTCAGCCTGGTTGAAAAGACTGTTCTAAAAAGACAAAACAAGGGCTGG
TAGATGGCTCTAGCCCCCAGACCAGAGGATCCCTGGAACCTACATGGTGG
AAGGAAAGAACCGAATCCTAAAAGTTGTTCCTGACTTCTGTATGTGTGTG
TGTGCACATGTGTGTACATGTGTGTATGTGTGCATGTATGTGTGTGCATA
CATGTGTACATGTGTGTATGTGTGTCTGTGTGCATGCATGTGTACATGCG
TGTGTGCGTGCGTGCACATGTGCTATTCTTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_h19.b1 MSMg01no212_h19.b1 CHROMAT_FILE:
MSMg01no212_h19.b1 PHD_FILE: MSMg01no212_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:16 2005
         (339 letters)



>mm_chr8_3191123_3191861
          Length = 739

 Score =  600 bits (310), Expect = e-176
 Identities = 331/338 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcattgtgtagtcctgcttgacctagtagtcactacatagactaggccaggcttgaact 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctcattgtgtagtcctgcttgacctagtagtcactacatagactaggctaggcttgaact 260

                                                                       
Query: 61  cacagaaatccatctacctctgcctcccaatggcagaactagtgtaccaccacactaaga 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 cacagaaatccatctacctctgcctcccaatggcagaattagtgtaccaccacactaaga 320

                                                                       
Query: 121 ctctcccctctcaaagacagagattgaagacaatcctttgtggataattttagctgttct 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ctctcccctctcaaagacagagattgaagacaatcatttgtggataattttagctgttct 380

                                                                       
Query: 181 gagttcaagaatgtgtgtgctacaggtgtatgtgttatatgtgtggtatgtgtccactct 240
           |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 381 gagttcaagaatgtgtgtgctacaggtgtatgtgttttatgtgtggtatgtgcccactct 440

                                                                       
Query: 241 atgtgtatacatgtgtgtgtatatgtatgtgcacctatatagtgtgtgcaatgtatgtat 300
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 441 atgtgtatacatgtgtgtgtatatatatgtgcacctatatagtgtgcgcaatgtatgtat 500

                                                 
Query: 301 gtgtgcatatatattgttacatgtgtgcatgtgtgctt 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgcatatatattgttacatgtgtgcatgtgtgctt 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)