Query= MSMg01no212_l01.b1 MSMg01no212_l01.b1 CHROMAT_FILE:
MSMg01no212_l01.b1 PHD_FILE: MSMg01no212_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:32 2005
(550 letters)
>mm_chr8_58677356_58678307
Length = 952
Score = 1029 bits (532), Expect = 0.0
Identities = 547/552 (99%), Gaps = 2/552 (0%)
Strand = Plus / Minus
Query: 1 gtatggatatgtgacaatgaataaaatcagtaattcataactattttgcttatctatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gtatggatatgtgacaatgaataaaatcagtaattcataactattttgcttatctatttt 693
Query: 61 gtaaatgttaatgaataaaaatcatttgctaactgatattttcttagcaccttgggactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gtaaatgttaatgaataaaaatcatttgctaactgatattttcttagcaccttgggactt 633
Query: 121 -atttagaatgtaatctaagtgataactttctgcctttaacctctgtcacctgtttggtt 179
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aatttagaatgtaacctaagtgataactttctgcctttaacctctgtcacctgtttggtt 573
Query: 180 ctccaataggtccttgttatatattttaactatacctaggtggcaggaacagatttagaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctccaataggtccttgttatatattttaactatacctaggtggcaggaacagatttagaa 513
Query: 240 atgtctgcaccttgcctttaccatcagcattgtgcttgccctctgcttccatcttttata 299
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 512 atgtctgcaccttgcctttaccatcagcattgtgcttgccttctgcttccatcttttata 453
Query: 300 taaataactttaaaatgtttctctgttatttgagaatcattcaaacaccaaacctaatag 359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 452 taaataactttaaaatgtttctgtgttatttgagaatcattcaaacaccaaacctaatag 393
Query: 360 acagtaaacataaatgatgagatgctatgtgttaggtggtgtcatctcctctgtacagaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 acagtaaacataaatgatgagatgctatgtgttaggtggtgtcatctcctctgtacagaa 333
Query: 420 cgaagtagaggacttaatttagaaataggacattgcagagactgtcagttacactcaaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cgaagtagaggacttaatttagaaataggacattgcagagactgtcagttacactcaaag 273
Query: 480 aatccacactagagtcaggttggctcttaatccatcaggacac-tgtttatgtaagaaga 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 272 aatccacactagagtcaggttggctcttaatccatcaggacacttgtttatgtaagaaga 213
Query: 539 cagcaatatcaa 550
||||||||||||
Sbjct: 212 cagcaatatcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 952
Length adjustment: 10
Effective length of query: 540
Effective length of database: 942
Effective search space: 508680
Effective search space used: 508680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no212_l01.g1 MSMg01no212_l01.g1 CHROMAT_FILE:
MSMg01no212_l01.g1 PHD_FILE: MSMg01no212_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:32 2005
(534 letters)
>mm_chr8_58595236_58596167
Length = 932
Score = 975 bits (504), Expect = 0.0
Identities = 526/534 (98%), Gaps = 2/534 (0%)
Strand = Plus / Plus
Query: 1 tactttcttgagatttattgttgaaatgacaaagaaacatgtgcaagcacactaaaaaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactttcttgagatttattgttgaaatgacaaagaaacatgtgcaagcacactaaaaaa- 259
Query: 61 atttgcttttagaatgattttaaaagtatatattgccttcttttctctgaactcttattt 120
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 260 -tttgcttttagaatgattttaaaagtatatattgccttctttcctctgatctcttattt 318
Query: 121 tcctaaatgataatttcccccagcaaaggaaccaattattgtagttactagcaacttttt 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccctaaatgataacttcccccagcaaaggaaccaattattgtagttactagcaacttttt 378
Query: 181 aaatccacacatttcaaaatcaactacatggaaatcaaaccaattgcctttctctgttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaatccacacatttcaaaatcaactacatggaaatcaaaccaattgcctttctctgttaa 438
Query: 241 ttatgcatttgacagtaaatttgtaaaacttatttaaacaatagatcttatctatttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttatgcatttgacagtaaatttgtaaaacttatttaaacaatagatcttatctatttctt 498
Query: 301 aactgtataaagagtgtttgaaaggcatctaataagagaaacatccaggtgacaattata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aactgtataaagagtgtttgaaaggcatctaataagagaaacatccaggtgacaattata 558
Query: 361 taggtaatgtcgctatatctgactatacatcacaatatcttgctataattgacaatatca 420
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 559 taggtaatgtcgctatatctgactgtacatcacaatatcttcctataattgacaatatca 618
Query: 421 atgcaccctggtgcctgggtgcttgatgctttacagtcattcagtggcaatttttctgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atgcaccctggtgcctgggtgcttgatgctttacagtcattcagtggcaatttttctgct 678
Query: 481 tttggcatttccatattctaaatttatatttttatcattttaaaacctacaatg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tttggcatttccatattctaaatttatatttttatcattttaaaacctacaatg 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 932
Length adjustment: 10
Effective length of query: 524
Effective length of database: 922
Effective search space: 483128
Effective search space used: 483128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
