Query= MSMg01no212_l02.b1 MSMg01no212_l02.b1 CHROMAT_FILE:
MSMg01no212_l02.b1 PHD_FILE: MSMg01no212_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:32 2005
(318 letters)
>mm_chr8_58677667_58678385
Length = 719
Score = 582 bits (301), Expect = e-171
Identities = 310/313 (99%), Gaps = 1/313 (0%)
Strand = Plus / Minus
Query: 5 gaattcaatagtcttaacaccaaaacaaaactactctataatacagttaagaaaaccagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcaatagtcttaacaccaaaacaaaactactctataatacagttaagaaaaccagt 458
Query: 65 taggcactgcttcctggtatggatatgtgacaatgaataaaatcagtaattcataactat 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 taggcactgcttcatggtatggatatgtgacaatgaataaaatcagtaattcataactat 398
Query: 125 tttgcttatctattttgtaaatgttaatgaataaaaatcatttgctaactgatattttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tttgcttatctattttgtaaatgttaatgaataaaaatcatttgctaactgatattttct 338
Query: 185 tagcaccttgggactt-atttagaatgtaatctaagtgataactttctgcctttaacctc 243
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 337 tagcaccttgggacttaatttagaatgtaacctaagtgataactttctgcctttaacctc 278
Query: 244 tgtcacctgtttggttctccaataggtccttgttatatattttaactatacctaggtggc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgtcacctgtttggttctccaataggtccttgttatatattttaactatacctaggtggc 218
Query: 304 aggaacagattta 316
|||||||||||||
Sbjct: 217 aggaacagattta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space: 219390
Effective search space used: 219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no212_l02.g1 MSMg01no212_l02.g1 CHROMAT_FILE:
MSMg01no212_l02.g1 PHD_FILE: MSMg01no212_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:32 2005
(286 letters)
>mm_chr8_58595186_58595869
Length = 684
Score = 509 bits (263), Expect = e-148
Identities = 279/285 (97%), Gaps = 2/285 (0%)
Strand = Plus / Plus
Query: 1 atattgatgtttgaatgtcaactgcagaatagttttattgactatatctgtactttcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattgatgtttgaatgtcaactgcagaatagttttattgactatatctgtactttcttg 260
Query: 61 agatttattgttgaaatgacaaagaaacatgtgcaagcacactaaaaaaaatttgctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 agatttattgttgaaatgacaaagaaacatgtgcaagcacactaaaaaa--tttgctttt 318
Query: 121 agaatgattttaaaagtatatattgccttcttttctctgaactcttattttcctaaatga 180
||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||
Sbjct: 319 agaatgattttaaaagtatatattgccttctttcctctgatctcttatttccctaaatga 378
Query: 181 taatttcccccagcaaaggaaccaattattgtagttactagcaactttttaaatccacac 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taacttcccccagcaaaggaaccaattattgtagttactagcaactttttaaatccacac 438
Query: 241 atttcaaaatcaactacatggaaatcaaaccaattgcctttctct 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atttcaaaatcaactacatggaaatcaaaccaattgcctttctct 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 684
Length adjustment: 9
Effective length of query: 277
Effective length of database: 675
Effective search space: 186975
Effective search space used: 186975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
