Query= MSMg01no213_k23.b1 MSMg01no213_k23.b1 CHROMAT_FILE:
MSMg01no213_k23.b1 PHD_FILE: MSMg01no213_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:47 2005
(323 letters)
>mm_chr8_104040130_104040852
Length = 723
Score = 574 bits (297), Expect = e-168
Identities = 310/319 (97%), Gaps = 8/319 (2%)
Strand = Plus / Plus
Query: 5 gaattcaatgccatcttctgcctattgtgaacaggcacatacatgttacatatacataca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcaatgccatcttctgcctattgtgaacaggcacatacatgttacatatacataca 272
Query: 65 tacatacatacatacatccatacatacatacatacatacactcaaaacactcatagatat 124
|||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tacatacata--------catacatacatacatacatacactcaaaacactcatagatat 324
Query: 125 gattttcccatgaagtcaacttaaaaacacagaaagatgcctttctttctatagcatgac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattttcccatgaagtcaacttaaaaacacagaaagatgcctttctttctatagcatgac 384
Query: 185 tcaaagtcatcactatcaaagacaaaggaacaccggaatctgttcccaaagccatgtgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaagtcatcactatcaaagacaaaggaacaccggaatctgttcccaaagccatgtgag 444
Query: 245 tcctcaggcatggaagcgggagtgggtgggttggggagcagggcagggggatgatatagg 304
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctcaggcatggaagcaggagtgggtgggttggggagcagggcagggggatgatatagg 504
Query: 305 ggacttttggagaggaaac 323
|||||||||||||||||||
Sbjct: 505 ggacttttggagaggaaac 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no213_k23.g1 MSMg01no213_k23.g1 CHROMAT_FILE:
MSMg01no213_k23.g1 PHD_FILE: MSMg01no213_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:47 2005
(290 letters)
>mm_chr8_104170725_104171415
Length = 691
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%), Gaps = 1/288 (0%)
Strand = Plus / Minus
Query: 1 attacctgtgcctctttatgataatattttaatttcatatttctgttttccattttcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attacctgtgcctctttatgataatattttaatttcatatttctgttttccattttcaaa 429
Query: 61 gtacaaaggctacacataatcaaatattcataggtgaataagtaaatgaataccaataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtacaaaggctacacataatcaaatattcataggtgaataagtaaatgaataccaataaa 369
Query: 121 atggtcttccaccatgattaaatagggttctgtgcaaacagggtctttaactatgtgtta 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 368 atggtcttccaccatgattaaacagggttctgtgcaaacagggtctttaactatgtgtta 309
Query: 181 gctatagtttcatacctgtagagaagtgttcattattttcaaaga-tttttttaaggctt 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 308 gctatagtttcatacctgtagagaagtgttcattattttcaaagattttttttaaggctt 249
Query: 240 agaaaagccaaacaaacaaacaaatgcataagctaagcttcaacacag 287
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agaaaagccaaacaaacaaacaaatgcataagctaagcttcaacacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space: 191642
Effective search space used: 191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
