BAC Information

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BAC

Clone NameMSMg01-213P15
Chromosome8 (Build37)
Map Location 64,762,052 - 64,762,424
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775
Downstream geneLOC384830, LOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213P15.T7 (MSMg01no213_p15.b1)MSMg01-213P15.TJ (MSMg01no213_p15.g1)
ACCAG394790AG394791
length735737
length of high quality
(start - end)		683 (36 - 718)373 (365 - 737)
definitionCHROMAT_FILE: MSMg01no213_p15.b1 PHD_FILE: MSMg01no213_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:09 2005CHROMAT_FILE: MSMg01no213_p15.g1 PHD_FILE: MSMg01no213_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCAATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTAT
TGACGGTGTCTTTGGCCTTGCAGAAACTTTGCAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACATGCCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCAACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTACCACAAGGAGAGAGGAATGGGTCGATTCGCATTCTTCTACA
CGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTTGCTCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTAT
GTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAA
GCTTTAGGGCAGTCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGA
AGACTTTTTGCTATCCTAGGCTCTTTGCTATTCCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGAAAAAAATGGCCAGATGCATTAAAATGATTT
TAAAAGACATTAAATGACTTATTTTTCTATCTACAGTAATGGGAGCAATG
AGCTTTTAGGAAAAGTCTAGAAACTCCTAAGAATTAAGTACCACAGGGAA
GGAAGTGGGACTTCTGATTCCAATAAACTGAAACAAGACAACAGCATCAA
AAAAGGTCCACCTCCAAGATTCTTATGTTTCTCACCTGGATGTCTTTGCT
TTCTTCTGCTCTGACCCCATGTACCACACATCTTTACTATTGAGCCTTCT
TTTCTGATTTTATAGAGGCCTTCCTTAAACAGAATGCTGGAAAAAATTAT
TCATCACCTAAAGCCCAATCTATGAAGGTAAAGCCCTGTGTTCTTTGGCC
AAGCCCTGACTACCACTTAACAATCCACTCTTCAACATTTGTACTACAGG
TTTCCTGGCTTATTTCTATTGCAACTGAGATACTTCAAATGAAACAAAAT
AGATGTGACGGAGTCTCTTATATACTGACCTAAACCTTATCTGCAAAGCA
AAAGCATGCATGGCTGTACCATTCTTGTCATATTAACAGATGGTCGTCCT
GATGAACTCCTCTTTCTTAACCCTTTTTGATTCTCACTTTATATAGTTAC
CTGCATTCTGCACAGAATCCTATAAACTGATCTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_p15.g1 MSMg01no213_p15.g1 CHROMAT_FILE:
MSMg01no213_p15.g1 PHD_FILE: MSMg01no213_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:09 2005
         (373 letters)



>mm_chr8_64761852_64762624
          Length = 773

 Score =  698 bits (361), Expect = 0.0
 Identities = 370/373 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggccttccttaaacagaatgctggaaaaaattattcatcacctaaagcccaatctatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 573 gaggccttccttaaacagaatgctggaaaaaattattcatcacctaaagtttaatctatg 514

                                                                       
Query: 61  aaggtaaagccctgtgttctttggccaagccctgactaccacttaacaatccactcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaggtaaagccctgtgttctttggccaagccctgactaccacttaacaatccactcttca 454

                                                                       
Query: 121 acatttgtactacaggtttcctggcttatttctattgcaactgagatacttcaaatgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acatttgtactacaggtttcctggcttatttctattgcaactgagatacttcaaatgaaa 394

                                                                       
Query: 181 caaaatagatgtgacggagtctcttatatactgacctaaaccttatctgcaaagcaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 caaaatagatgtgacggagtctcttatatactgacctaaaccttatctgcaaagcaaaag 334

                                                                       
Query: 241 catgcatggctgtaccattcttgtcatattaacagatggtcgtcctgatgaactcctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 catgcatggctgtaccattcttgtcatattaacagatggtcgtcctgatgaactcctctt 274

                                                                       
Query: 301 tcttaaccctttttgattctcactttatatagttacctgcattctgcacagaatcctata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tcttaaccctttttgattctcactttatatagttacctgcattctgcacagaatcctata 214

                        
Query: 361 aactgatctgtat 373
           |||||||||||||
Sbjct: 213 aactgatctgtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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