BAC Information

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BAC

Clone NameMSMg01-214N06
Chromosome8 (Build37)
Map Location 101,537,828 - 101,538,138
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214N06.T7 (MSMg01no214_n06.b1)MSMg01-214N06.TJ (MSMg01no214_n06.g1)
ACCAG395310AG395311
length731732
length of high quality
(start - end)
315 (46 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no214_n06.b1 PHD_FILE: MSMg01no214_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:16 2005CHROMAT_FILE: MSMg01no214_n06.g1 PHD_FILE: MSMg01no214_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTAGTTTATAGTTGACAAGGAGCCCTCATTTTATTTTCAATCAACAGA
AATAGCAAATAGCCTATTTACCTATTCTACTAAAATTCAAAATAAGAATA
CTAGATAAAGCCTTGAATACCCTATATCTACTGTGCTGAAGGCTGTGGAT
ACTCCAGTTACCATCACACGCTGGCCCACATGCTGGTTCTTTGATTCAGG
CAAAATTGAGAGAAACGATAGCACAACCTAGCAAAAGAAAACAAGATTGT
GAGGAAAAAGAAGGCAGGGAATCTAGATAATGTAGTCAGGGAGATTTCTC
AGAGATTTTGTATTGTGTGCACCGCTCTCAAATAGAGTGATCTCAGATGG
ATATGGCTGGATAGAAATGTCCACGGATGTTCCTGTCTCGGTCTACCGAG
TGCAGGGATTACAGATATACTGCCACATCAGGCTTTTGACATTGGTGCAG
GAGATCAGAACTCAAGTCATTATGCTTTCACAGCAAGCACTTTTCCAGCA
GAGGTATTTCTTTAGCCCCTTTATCAGCTTGTCTAAGAAAGGAACTATTT
GCAGCCTATCCTTAGGCAATTGATACAGAATTATCCCATTTTGACTATCT
TTATTTTTGCCCTTATCATTTTAGGATAAATTGCTACATGACATATTTTT
ATGCCCAGCATCAATGATGAGAAACATATTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGTCACTGAGGTTGACATCTT
CCACTGAAGTTCCACTTGAACTTGCAATGATGTAGTCCACTGTATTTGAG
CTATATAGTTTTATCCCTTTATTGTGTTTTCCATTGCACCTTGAGATTTT
TCGATCTGTGTATAAAAATTCTATTTTAAATTGAACATATTACAGTTCAC
TCTCTGTTATCAATTTTCATGGATCTGTATAAATGTAATGTCATATGTCA
CTATCACAGCTTATGAAGTAAACATTGAGTACCTTAAAGAAAATTCTTAT
GCTTCACCCATTTATGCTTTCCCCCCCCCCAGCCTCTTGACCACCAAAAA
TCAGTTCGTCCATTACCTGCGCTCATTATATACTTTCTCAGTATGTTGTT
TATTAGACACATGGCAGGCAACCTTTTGCTGACTGGATTCTTTCACTTAA
CACTGCAGATTCCACTGTCATCTATGTTGGAATTAATGATGTTTTAATCA
CTACACAATACTCTGTGTCATGGATGTATCACAAGTTATCAATTTCTCTT
TGGAAGACATACCCATTGAAGCAAATCTCATCTATAATGAATGAAGCTTA
TGTAAACATTTCATGCAGCATTTTATGTATCAATAGTATCTTACTATTTT
TTATTCTGCTACTCTTAAAATAGATCTTCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_n06.b1 MSMg01no214_n06.b1 CHROMAT_FILE:
MSMg01no214_n06.b1 PHD_FILE: MSMg01no214_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:16 2005
         (315 letters)



>mm_chr8_101537624_101538338
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattagtttatagttgacaaggagccctcattttattttcaatcaacagaaatagcaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattagtttatagttgacaaggagccctcattttattttcaatcaacagaaatagcaaa 456

                                                                       
Query: 65  tagcctatttacctattctactaaaattcaaaataagaatactagataaagccttgaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tagcctatttacctattctactaaaattcaaaataagaatactagataaagccttgaata 396

                                                                       
Query: 125 ccctatatctactgtgctgaaggctgtggatactccagttaccatcacacgctggcccac 184
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 395 gcctatatctactgtgctgaaggctgtggatactccagttaccatcacatgctggcccac 336

                                                                       
Query: 185 atgctggttctttgattcaggcaaaattgagagaaacgatagcacaacctagcaaaagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atgctggttctttgattcaggcaaaattgagagaaacgatagcacaacctagcaaaagaa 276

                                                                       
Query: 245 aacaagattgtgaggaaaaagaaggcagggaatctagataatgtagtcagggagatttct 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aacaagattgtgagggaaaagaaggcagggaatctagataatgtagtcagggagatttct 216

                      
Query: 305 cagagattttg 315
           |||||||||||
Sbjct: 215 cagagattttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)