CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCG
CGGAATTCACTGATTCCCTCTGGGCAGAGTACAGACCGCTTCAGCCAGCT
GCCCGGGTTATGAGTAAACACTCCCTGTGGAGGGTACCACTTTGCTGGAC
CCAAATGGCCCATAAAACAAAACTCAGGCTAGACCTGGGAGGTTTAACCA
TGAACATTCCTGTAGCAGGCTTGGCAACGACTCCATAACCAAAGACCACA
AGGAGAGGAGAGGGCAGCTAGCCAGGCCTCGGGGCAACACGGAGGGTATG
GGCCACCTCGTTGCTCCTAGCTGGAGCCATGATGGGGAGGTGGCGCCCCG
GCCCCACTGTTTCCACCCTACATCCAAGGCACAGCCTTAAAGACATGTCA
GAGCTGGCTCCCTGCCACACCTGGCTGTGTCATCTTCTCCTTCAGCTTGC
CATATCCCCAATTCTGGGAGGCCCTGCCCGAGTGCCTGGGCGAAGCTCGG
CTTGGCCACACACTACTAGGGGGCCATAGCCAAGACGCTTAACTGTGTAA
AATCCCAGAGATGTCACACGGTATGGTGGGGGCTGGTGTCAGCACGAGAG
ATGAGGTGGGAACGCTTGGTCTACATCCCGGCTCGGACAACGCATTTTGC
AATATGTTGAGGCAGCTGCGTTATTACCGCTCGGCCGTGATAATTAAGAG
TAAGCTGACCCTATCTTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGATAAACCAACAGGAGTGAGCT
GGAGGAGAACTGGAAAAAGGCTGACAGCAGAGGAAAGGTGGCAGGTGGGG
ACAAGGACTGAGGAGCCCAGAGGGGGTGTGGCCTAGACGCTGGGAGGGGT
GGAGCCAATCCCCTAGATTCCCAGAGGAGTAGCCTGCCTACACTTGAAGA
GACCAGAGGGCCCCACAGTGGATTCTGACCCTAATCTGTGAGGAGTGTGT
GTGTGTGTGTGTGTGTGTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTTTTTTTTTTTCCCCNGCCCGGGCCCCCCGGNNGGGGGGGGGG
GGGGGGGGGGGGGGGGTTTTTCCCCCCCAAAAAAAAAAAAATATGTGTGG
GGGGGGGGGGGGTTTTCTCCCCTTCTTTTTGTTTTTTATATTTGTTGTTT
CGCGTTCTTTCTCTTCTCGCCCTCCTTATAACCTTTATTGCTGTCTTATA
CGCACTTTTGTGTTGTTGCTCTCTTTGTTTTTTCTTATTTTTTTATTGTG
GTTCTTCGCGTGCTTTCGAGTCTTTGTTTTTATGGTAGTTGGGTCGCTTT
TAAACTTTTTTTTTTATCACTCAGTCCGCTTTAGCAGTTTGTTTTGTTCT
TCGTCCTTTTTTCGTTTTTTGCGGTATTTTTCTCTTGTTGTCATTTCTGT
CCGGTTGTGTCTTTTCTTTTTTCCTTGCCCTC

Query= MSMg01no215_k10.b1 MSMg01no215_k10.b1 CHROMAT_FILE:
MSMg01no215_k10.b1 PHD_FILE: MSMg01no215_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:23 2005
         (504 letters)



>mm_chr8_122840896_122841799
          Length = 904

 Score =  928 bits (480), Expect = 0.0
 Identities = 498/504 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcagagtacagaccgcttcagccagctgcccgggttatgagtaaacactccctgtggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ggcagagtacagaccgcttcagccagctgcccgggttatgagtaaacactccctgtggag 645

                                                                       
Query: 61  ggtaccactttgctggacccaaatggcccataaaacaaaactcaggctagacctgggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ggtaccactttgctggacccaaatggcccataaaacaaaactcaggctagacctgggagg 585

                                                                       
Query: 121 tttaaccatgaacattcctgtagcaggcttggcaacgactccataaccaaagaccacaag 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 584 tttaaccatgaacattcctgtagcaggcttggcaatgactccataaccaaagaccacaag 525

                                                                       
Query: 181 gagaggagagggcagctagccaggcctcggggcaacacggagggtatgggccacctcgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gagaggagagggcagctagccaggcctcggggcaacacggagggtatgggccacctcgtt 465

                                                                       
Query: 241 gctcctagctggagccatgatggggaggtggcgccccggccccactgtttccaccctaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gctcctagctggagccatgatggggaggtggcgccccggccccactgtttccaccctaca 405

                                                                       
Query: 301 tccaaggcacagccttaaagacatgtcagagctggctccctgccacacctggctgtgtca 360
           ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||
Sbjct: 404 tccaaggcacagccttaaagacatgtcagagctggctccctgccgtagctggctgtgtca 345

                                                                       
Query: 361 tcttctccttcagcttgccatatccccaattctgggaggccctgcccgagtgcctgggcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tcttctccttcagcttgccatatccccaattctgggaggccctgcccgagtgcctgggcg 285

                                                                       
Query: 421 aagctcggcttggccacacactactagggggccatagccaagacgcttaactgtgtaaaa 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 284 aagctcggcttggccacacactacgagggggccatagccaagacgcttaactgtgtaaaa 225

                                   
Query: 481 tcccagagatgtcacacggtatgg 504
           ||||||||||||||||||| ||||
Sbjct: 224 tcccagagatgtcacacggcatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no215_k10.g1 MSMg01no215_k10.g1 CHROMAT_FILE:
MSMg01no215_k10.g1 PHD_FILE: MSMg01no215_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:23 2005
         (245 letters)



>mm_chr8_122694520_122695164
          Length = 645

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgataaaccaacaggagtgagctggaggagaactggaaaaaggctgacagcagaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgataaaccaacaggagtgagctggaggagaactggaaaaaggctgacagcagaggaa 260

                                                                       
Query: 61  aggtggcaggtggggacaaggactgaggagcccagagggggtgtggcctagacgctggga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 261 aggtggcaggtggggacaaggactgaggagcccagagggggtgtggcctagatgctagga 320

                                                                       
Query: 121 ggggtggagccaatcccctagattcccagaggagtagcctgcctacacttgaagagacca 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ggggtggagccaatcccctagattcccagaggagtagcctgcctacgcttgaagagacca 380

                                                                       
Query: 181 gagggccccacagtggattctgaccctaatctgtgaggagtgtgtgtgtgtgtgtgtgtg 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gagggccccacagtggattctgaccctaatctgtgagaagtgtgtgtgtgtgtgtgtgtg 440

              
Query: 241 tgt 243
           |||
Sbjct: 441 tgt 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)