BAC Information

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BAC

Clone NameMSMg01-215P24
Chromosome8 (Build37)
Map Location 107,017,257 - 107,017,745
singlet/doubletsinglet
Overlap geneCcdc79
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2
Downstream geneAppbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215P24.T7 (MSMg01no215_p24.b1)MSMg01-215P24.TJ (MSMg01no215_p24.g1)
ACCAG396046AG396047
length765726
length of high quality
(start - end)
322 (37 - 358)590 (77 - 666)
definitionCHROMAT_FILE: MSMg01no215_p24.b1 PHD_FILE: MSMg01no215_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:48 2005CHROMAT_FILE: MSMg01no215_p24.g1 PHD_FILE: MSMg01no215_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCT
ACCTGTCTACCCACCTCTACTACCTACCACACATCATTGATGTTCTGGTA
ACTTCGAAATTTTCCTCACAGGGTAGCAAGTATTGAAGCCAGCACTTTGT
GCATTCTAGGCAAGAACTCTACCACTGAGCTATACCCCGCCCCATAACTT
GGGTTTTAAGAGGAACTGAGAGAACACCTTTAACCCCAGCATTGGGAGGA
AAGGTCGGAGCGAGGCAGATGCTGGAGGATCCCTGTTAGTTTGAGACCAG
CATGACTGGTCTACAAGCCCCAGGGTTACAGAGAAAGATCCTGGGGGCCG
GGGTGCGTTTTTGGGCCCACGCCCCCCCCCNNTNNNNTTTTTTTTCCTTT
CTCTTCTTCTTCCCCCCCCCAAAAAAAAAAAAAAATATTTGGTGGGGGGG
TGCGGCTTCTTATCTTTTTTACTTCCACCCTACTTGCCTCCCCATTTATT
CATCCTCCCTTACTTTCCCCCTTTTCTTCTATATTGCTTATCTCTCCTCC
CCGTCCTTCCCTGTTATAAAATTCCTACCCCCCCCTTTCCTTTTTCGCTT
CTACAACCTCCTTCCTTCCCCTCTTTCCATTTCCCCCTTCGTCTTCCTTC
TTTTTTTCTTCCTTTTTTCCCCCCTTTTCTTCCCTTCCCTTTTCCCGTTT
CTACCCCCATCCCTCTCCTATTCCCCTTCTTCTCCCCAATACTACTATCT
TCTTGTCTCCCCTTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAAATATGCTAATCTGTAAGCC
ATAATGTACATGCAGAGGACCTGGTGCACACCTGTGCAGGTCCTGTGCAT
GCTGCCGCAGTTTCTGTGAGTTCATAGAAGCTTTGCTTCCTTGATGTCCT
CTCACCCTTCTGGCTGTTATCCTGAGCTCTGAGGAGGGAGGGATTTGGTA
ATGGCATCCCATTTAGAGATGAGTGTTCCAAGGTCTTTCACTTTGTGCAT
AACATCTGGCTGCAGGTCTCTGTATTTGTTGTCTGCCACAGGAGGAAGCT
GTCCTACTGATGGCTGATCTAGGCACTATTTCCCTGGTCAGAGCATAGAT
GCAGTTTTTAAAAATAAATGTACAAAAAATCTCATGTTATTAAAAACTTA
GATTTCTGGAGGTTGTGGAAACTGAAGAGATAAGGATGTTGAAAGTTCAA
GGCTAACCTGGGTTATATGTATAGTGAGTTATACTGGGCTGTGATGCTCT
TATCTTCCTCTTCCCCAACACATCCCCCTTCAAAGATTTAAATTACCAAC
CTGAATTACCATAAGAAGGGACATCACTCTAGATTTTGTTTCCTAGTTTT
TATTTGCTGTATATGAGTGTTTGTCTACATGTGTGCCTATGTACTACATG
TGTGCCAGTGGAGTCAAAAGAAGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_p24.g1 MSMg01no215_p24.g1 CHROMAT_FILE:
MSMg01no215_p24.g1 PHD_FILE: MSMg01no215_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:49 2005
         (590 letters)



>mm_chr8_107016756_107017745
          Length = 990

 Score =  909 bits (470), Expect = 0.0
 Identities = 485/490 (98%), Gaps = 1/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 101 gaagctttgcttccttgatgtcctctcacccttctggctgttatcctgagctctgaggag 160
           |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 990 gaagctttgcttccttgatgtcctctgacccttctggctcttatcctgagctctgaggag 931

                                                                       
Query: 161 ggagggatttggtaatggcatcccatttagagatgagtgttccaaggtctttcactttgt 220
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 ggaggga-ttggtaatggcatcccatttagagatgagtgttccaaggtctttcactttgt 872

                                                                       
Query: 221 gcataacatctggctgcaggtctctgtatttgttgtctgccacaggaggaagctgtccta 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 gcataacatctggctgcaggtctctgtatttgttgtctgccacaggaggaagctgtccta 812

                                                                       
Query: 281 ctgatggctgatctaggcactatttccctggtcagagcatagatgcagtttttaaaaata 340
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ctgatggctgagcaaggcactatttccctggtcagagcatagatgcagtttttaaaaata 752

                                                                       
Query: 341 aatgtacaaaaaatctcatgttattaaaaacttagatttctggaggttgtggaaactgaa 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aatgtacaaaaaatctcatgttattaaaaacttagatttctggaggttgtggaaactgaa 692

                                                                       
Query: 401 gagataaggatgttgaaagttcaaggctaacctgggttatatgtatagtgagttatactg 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gagataaggatgttgaaagttcaaggctaacctgggttatatgtatagtgagttatactg 632

                                                                       
Query: 461 ggctgtgatgctcttatcttcctcttccccaacacatcccccttcaaagatttaaattac 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggctgtgatgctcttatcttcctcttccccaacacatcccccttcaaagatttaaattac 572

                                                                       
Query: 521 caacctgaattaccataagaagggacatcactctagattttgtttcctagtttttatttg 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caacctgaattaccataagaagggacatcactctagattttgtttcctagtttttatttg 512

                     
Query: 581 ctgtatatga 590
           ||||||||||
Sbjct: 511 ctgtatatga 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)