Query= MSMg01no216_d22.b1 MSMg01no216_d22.b1 CHROMAT_FILE:
MSMg01no216_d22.b1 PHD_FILE: MSMg01no216_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:10 2005
(318 letters)
>mm_chr8_49054476_49055193
Length = 718
Score = 431 bits (223), Expect = e-125
Identities = 285/319 (89%), Gaps = 23/319 (7%)
Strand = Plus / Plus
Query: 5 gaattcatctatctgtaccattcttgttactttagtaaactctctgagcctgggaaactt 64
|||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 214 gaatacatctatctgtacaattcttgttactttagtaaactctctgagtctgggaaactt 273
Query: 65 catagagaccacttcctagagtggtttagacacctcggtgttctgggagttcacattagc 124
| ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 274 cgtagagac---------gagtggtttagacacctcagtgttctgggagttcacattagc 324
Query: 125 atcagctgggctctgacgaggaccccctgggacagaatcacaatggcaggagcctgtgca 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 atcagctgggctctgacgaggacccccagggacagaatcacaatggcaggagcctgtgca 384
Query: 185 agaggaagggccagacaggaagccacaggaggatggggctcgagctccagtgttggtagc 244
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 agaggaagggccagacaggaagccacaggaggacagggctcgagctccagtgttggtagc 444
Query: 245 catcagtctagcaagaaggactaggtcccaatattttttt-------ctcatccccttca 297
||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct: 445 catcagtctggcaagaaggactaggtcccaaga-------gaacagcctcatccccttca 497
Query: 298 gatgcagcagccctgactg 316
||||||||| |||||||||
Sbjct: 498 gatgcagcaaccctgactg 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no216_d22.g1 MSMg01no216_d22.g1 CHROMAT_FILE:
MSMg01no216_d22.g1 PHD_FILE: MSMg01no216_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:10 2005
(331 letters)
>mm_chr8_49226753_49227477
Length = 725
Score = 491 bits (254), Expect = e-143
Identities = 309/330 (93%), Gaps = 6/330 (1%)
Strand = Plus / Minus
Query: 1 gggcagcccgcttcagaacaagggggacagagagaccccacagctaggaagttcttctct 60
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 524 gggcagcctgcttcagaacaagggggacagagagaccccacaactaggaagttcttctct 465
Query: 61 gacccctgcatgtgccccctcaccccaaacgccagttttaagagaccacaatgtaacacc 120
|||| || |||||| ||||||||||||||| ||| |||||||||||||||||||||| ||
Sbjct: 464 gacctctacatgtgtcccctcaccccaaacaccatttttaagagaccacaatgtaac-cc 406
Query: 121 ccaccacccccagtcctggagagaatggtatcgacacttcaggtattctctgagcacaaa 180
|| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 405 cccccaccc-----cctggagagaatggtattgacacttcaggtattctctgagcacaaa 351
Query: 181 cccgtgtaatgtgctttgcagacaacacagaaactacacaagcagagctgggcatataga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cccgtgtaatgtgctttgcagacaacacagaaactacacaagcagagctgggcatataga 291
Query: 241 ataaatataaaagcaaacacgttttggtgctggatgattttttttttattttaacaatac 300
|||||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct: 290 ataaatataaaagcaaacacgtcttggtgctggatgattttaataaaattttaacaatac 231
Query: 301 tggcagagatccaaattgtaaaaaaatgct 330
||||||||||||||||||||||||||||||
Sbjct: 230 tggcagagatccaaattgtaaaaaaatgct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 725
Length adjustment: 9
Effective length of query: 322
Effective length of database: 716
Effective search space: 230552
Effective search space used: 230552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
