Query= MSMg01no216_f03.b1 MSMg01no216_f03.b1 CHROMAT_FILE:
MSMg01no216_f03.b1 PHD_FILE: MSMg01no216_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:16 2005
(326 letters)
>mm_chr8_45131680_45132403
Length = 724
Score = 536 bits (277), Expect = e-157
Identities = 310/321 (96%), Gaps = 2/321 (0%)
Strand = Plus / Minus
Query: 5 gaattctccactatcgctttacccacctaatggactgtgctcaaatgcactttgctgcca 64
|||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 712 gaattctctactgtcgctttacccacctaatggcctgtgctcaaatgcactttgctgcca 653
Query: 65 aaagtggaggttaccttgttgctccctagtcctctctcccacagttccttctctattttt 124
||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 652 aaagtggaggttaccttattgctccctagtcctctctgctacagttccttctctattttt 593
Query: 125 cacatgtgagattcttttcaacattcatattaatatatataatatagttgttaatatata 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ctcatgtgagattcttttcaacattcatattaatatatataatatagttgttaatatata 533
Query: 185 catatattagtgtgaattaagtactctactaatcttattcacaaatatgcatcattttat 244
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 532 catatattagtgtgaattaagtactctagt-atcttattcacaaatatgcatcattttat 474
Query: 245 atcatcaactcttattatctcatatataggagagacaccagtctaccttaatcagatcag 304
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 473 atcatcaattcttattatctcatatataggagagacaccag-ctaccttaatcagatcag 415
Query: 305 ttactagacttttatgttcag 325
|||||||||||||||||||||
Sbjct: 414 ttactagacttttatgttcag 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 724
Length adjustment: 9
Effective length of query: 317
Effective length of database: 715
Effective search space: 226655
Effective search space used: 226655
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no216_f03.g1 MSMg01no216_f03.g1 CHROMAT_FILE:
MSMg01no216_f03.g1 PHD_FILE: MSMg01no216_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:16 2005
(626 letters)
>mm_chr8_45044987_45046012
Length = 1026
Score = 1185 bits (613), Expect = 0.0
Identities = 622/625 (99%)
Strand = Plus / Plus
Query: 1 tagttactcttcgaaatatgggacctgagttatatctctggtcccagacatgagtttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagttactcttcgaaatatgggacctgagttatatctctggtcccagacatgagtttcta 260
Query: 61 aactacccagatggtcattaattgttatttttctagccctggttccagaacccttaaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactacccagatggtcattaattgttatttttctagccctggttccagaacccttaaacc 320
Query: 121 ttataaaatgaacaatctagcaagaggcattacatgacattgacatgtccacaagattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttataaaatgaacaatctagcaagaggcattacatgacattgacatgtccacaagattca 380
Query: 181 acggtcctgtcaatcacctgtacagaaagaatgcacagaaaggctttctactccagaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acggtcctgtcaatcacctgtacagaaagaatgcacagaaaggctttctactccagaata 440
Query: 241 tttagaaggagcatagaaaccccacctaactagcaaattggcccaatggtccctcagcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagaaggagcatagaaaccccacctaactagcaaattggcccaatggtccctcagcaa 500
Query: 301 ctgtccactctcatccttttagtctgttatgacctctgccaatctgtgtctatccaaatt 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ctgtccactctcatccttttagtctgttatgacctctgccaatctgtatctatccaaatt 560
Query: 361 ctgtttttgaaaactgtcagaaccagagcttcagggatgccagggggagatttctatgac 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtttttggaaactgtcagaaccagagcttcagggatgccagggggagatttctatgac 620
Query: 421 aaaactcttgctcaagtctcctaattttactgtctataaagagcagagaggttcttatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaactcttgctcaagtctcctaattttactgtctataaagagcagagaggttcttatat 680
Query: 481 tagtgagatacactatatattttcaaaattaaccaaagatgagtagtcaccatggcaaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagtgagatacactatatattttcaaaattaaccaaagatgagtagtcaccatggcaaca 740
Query: 541 actaacttgacctggtaaaaaactgtcacagcagcacaaagatccaaagtggcctgaact 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 actaacttgacctggtaaaaaactatcacagcagcacaaagatccaaagtggcctgaact 800
Query: 601 ccactgatttttacaaaggtgaata 625
|||||||||||||||||||||||||
Sbjct: 801 ccactgatttttacaaaggtgaata 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
