BAC Information

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BAC

Clone NameMSMg01-216P23
Chromosome8 (Build37)
Map Location 98,548,751 - 98,549,071
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216P23.T7 (MSMg01no216_p23.b1)MSMg01-216P23.TJ (MSMg01no216_p23.g1)
ACCAG396678AG396679
length729735
length of high quality
(start - end)
316 (36 - 351)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no216_p23.b1 PHD_FILE: MSMg01no216_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:14 2005CHROMAT_FILE: MSMg01no216_p23.g1 PHD_FILE: MSMg01no216_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGT
GTCTGAGCACCGGTGTTTTTTGTGTGGGCTCTGCAGTGCTCCACATAAAC
ATGTTTGCCAAGGCCTCAGAGAAGCTTTGAGCTTCATATTGCAAAGCCAT
GCTTGCATTCAGACTAAGCAAGCTCCTGCTGCATAGGAGAAGAGCCAGAG
TTGGATAAAGTGAGGCCCTTGAGATTGAACGCTGGCAGTATGAAGACTGT
CTGAATTGCCTGCCACCACCAGGGCTGAAATCAGACACAGGCCAAGACTA
ACCCTTGATAGGAGTGTCGTTTGGCTCACCAGTACTCTGTATCTATCCTG
TTNGCTANGTCCNTGACCTGANACCACCCATTCTTGGTGCTCTTTGAAAA
CTGGGCACAACTGTTAGATCAAAAAATTTTTTACGGGGGAGGGTTGTCTT
TGAGATAATGCCATTCACCATCCACCACGAAGTTTGTGGAAACTAAAGGG
CCAAACCACATTCCAGTCAAAGATATCACTTTCTTGGTGTTGCAAGGAAA
AGGCCTTCCTTGGTACTGATCCTAGGCTGCCTATAATGGCGAGGGGTGAT
TCTTCTATATCACCTGGTTTATTTGTGAAATGCTGGCTGTTCAAAGCGCA
TATAGGCACAAATTTCTTTTTTCTTTCCATTTTTTATTACGCCTTTTATC
TCATTTACCTTCCCAATGCTATTACCACA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAACATCACACAATTGCACAAAGT
ATCTGCAGCTGGCCAAATCATGCCCTGCCAGAGAAGGAAGCAAATCATGG
TTGCTGTGGACAATCTGAGGCAGTCCCACGTGCCACACCTGGGATTAAAA
TGAAAACATTCATATATAGCCCAGAAAACAAATGAACAAGTACACCGGTA
TGCCTAGCTTGTGTAGTTGCTGGGGATCGAACCCAGGCCTTTGTGCATGC
TGGACAAGCGTGGCTACCAGTTGATCCATATGTCCAGCCTCTGGCTTGAA
ATCTAGGTCAGGTTTTTTGNGTACTGGACCTTAACTAGGATTTCTGCAGC
TTAAACTACAAAACAAAGCCTACCCTATAATAAAAAACAATAATGTGGAA
AGACTAAGCGCCTGCCTGACATGTTTTCCACCTCTGGACGGTACTGGCAG
ACTAGATTGCAAAATCCTAGTTCTCAGTACTTACAGCATCAATTCATAGG
CTTCCTGGCAAATGTGAAACCACATTTCTACTACTTTGAATGCACTACCT
TACAATATGTTTCGCGGCTTGTTTCTTTCTCCACCAGAGTAATTTTAGGA
AAAACATGTATTAGATGAATACTGAACCCCATTGAAAGGCATAGTATTTT
ATCAATATTANTATATATTTTATTTCCATTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_p23.b1 MSMg01no216_p23.b1 CHROMAT_FILE:
MSMg01no216_p23.b1 PHD_FILE: MSMg01no216_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:14 2005
         (316 letters)



>mm_chr8_98548704_98549419
          Length = 716

 Score =  534 bits (276), Expect = e-156
 Identities = 306/322 (95%), Gaps = 11/322 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgtgtctgagcaccggtgttttttgtgtgggctctgcagtgctccacataa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggaattctctgtgtctgagcaccggtgttttttgtgtgggctctgcagtgctccacataa 309

                                                                       
Query: 64  acatgtttgccaaggcctcagagaagctttgagcttcatattgcaaagccatgcttgcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 308 acatgtttgccaaggcctcagagaagctttgagcttcatattgcaaagccatgcttgtat 249

                                                                       
Query: 124 tcagactaagcaagctcctgctgcataggagaagagccagagttg----------gataa 173
           |||||||||| |||||||||||||||||| |||||||||||||||          |||||
Sbjct: 248 tcagactaaggaagctcctgctgcataggcgaagagccagagttgactgcacaaggataa 189

                                                                       
Query: 174 agtgaggcccttgagattgaacgctggcagtatgaagactgtctgaattgcctgccacca 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 agtgaggcccttgagattgaacgctggcagtatgaagactgtctgaattgcctgccacca 129

                                                                       
Query: 234 ccagggctgaaatcagacacaggccaagactaacccttgataggagtgtcgtttggctca 293
           ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 128 ccagt-ctgaaatcagacacaggccaagactaacccttgataggagggtcgtttggctca 70

                                 
Query: 294 ccagtactctgtatctatcctg 315
           ||||||||||||||||||||||
Sbjct: 69  ccagtactctgtatctatcctg 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)