BAC Information

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BAC

Clone NameMSMg01-217C01
Chromosome8 (Build37)
Map Location 8,248,993 - 8,249,325
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039836, Efnb2, 9430010O03Rik, Tmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217C01.T7 (MSMg01no217_c01.b1)MSMg01-217C01.TJ (MSMg01no217_c01.g1)
ACCAG396761AG396762
length1,2541,276
length of high quality
(start - end)
420 (29 - 448)333 (506 - 838)
definitionCHROMAT_FILE: MSMg01no217_c01.b1 PHD_FILE: MSMg01no217_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:27 2005CHROMAT_FILE: MSMg01no217_c01.g1 PHD_FILE: MSMg01no217_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGCATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
TTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTGATTTTCTGGAG
TCCATCTTTTTGAGTTCTTTGTATATACTGGATAGTAGTCCCCTATCTGA
TTTAGTATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCT
TATTGATAGTGTCTTTTGCCTTACAGAAGCGTTGCAATTTGCCTGGCAAA
TACAGAAGTGGATGTTCACAGTCATCTATGGGATAGAACACAGGCCCCCT
AATAAAGAAGCTAGAGAAAGTACCCAAGGAACTGAAAGAGTCTGCAACCC
TATAGGAGGAACAACAATATGAACTCACCAGTAGCCTCTAGAGCTTGTGT
CTCTAGCTGCATATGTAACAGAGGATGGCCTAATTGGCCATCAATGGGAT
TTTTTGTCCCCCCCCCCCCGAAGATCATATGCCCCAGTAAAAAAAAAGAG
GGGGGCCAGGCAGTGGGAGAGGTTGCGTTGAGGAGCAGGGCGGGGGGAGG
GTATAGGGGACTTTCAGGATAGCATTTGAAAAGTAAATGAAGAAAATAAC
TAAAAAAAAAGAATAAAATATGATTGTATCAACTCCCTCATTTTCTATCT
TCACCTCAATCCTCCCAGAACATCTTCATTTTCTCTTCCCCACTCCTCTT
CCTTTGACTCTTGGTTCCTTATGCTCTATATCTGACCAAGTCCAATTAGA
GCTGCTTATACACATGGGTGTGGAACTATCCTGCCAGAGCACCCTGTAGA
CTCCTATCAACTGCCAGTGACACCTCAGTTAGAAGTGGTCCCCACGAGTC
CCTCCACAATCCCTTCTGCAACTTGTGCTGGCTTGATTCCCCCCAGGTCT
TACGTAGGCAGCCACAGCTGCTGTTGAGTTTTTGATTGCATTAGTACATC
CTGTCCATAAGGCATTTTCTAAGGTTTTTTCTCTGGCCTTGGTTTTTCTT
TCCAAACTCTTTTCCAATGTTCCTTTGTGTGGTCCTTTTTTTAAAAAAAT
ATCCCCTTTTTTTTTGATATCCTTCTTTTTATGCTTTTATTTCCATCATT
ATTACTTTAATAAATCTCTTCTAATTAAATCTTGCCAAATAAAAAATATC
TTCTCTATATTTTGGTATAATATTATCAGGCTCACTATTTCCTTTCACAT
TCCTCCCCTCCTAATAAACCCCCTCCCCTTCTCCTTAATAAATAATTTTT
TGTT
NNTTTTACATGGTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATATTTCATAACATCAACAAACCAGATGAA
CCTCATCCACTTAAAGCGGAGAACAGCGAAAAGAACAAATGTCTTGTGAA
GAGTGGAAATGAGAACAACGTGTCTGAGGTTACCCAGTGGAAATAAGCTG
CGGATGTTGTGCATGAGGTAATTATTTCTGTAGTGCCGTTTCTGCATCTA
GTTTATAAGCATGTCAGGGTGTGCAATCCAGGCATATTTCAAGGAAAGAA
ATACCCATCTACACGATGTGGGGAGAAGCCAGTCACAGACTCAGCGAGCT
CCACAAAAGTCCTAATAAAACTTAAGCTTGGAGCAGAATGCCCCACAGGC
CATATTACATAGAAGCTGGATGTTCCTGTCAGTCACTTTGTTCCCCTGCA
AGCTTTTTTTCCCCCCCCCCCCCTTCTTTAACTATTTGAAAACAAAAAAA
AAGTGTGTTAAAGAACAAACCAAAGCAATGCAGAACAAAAGAAAGCAGCA
GCAACAACAACAACAACAAAATACACTCAGAATGAAAGTAAGTTCCTATG
AAATTAATTCAACAAAGAGGGATAAATATGCCCTAATTATTATCTAGGCT
GATTCACCTCTTCTGGGAAATTTCCATGGAAGTTAATGATGTATTAGATG
ATGCATTAATGTTAAAGATACAGTGAGAAATCTTACTTTTTCCTTTATAT
AACTTTCCAAAGTAATGAGTTGACACAACCAAAGAATATGTAGGTGTTTA
ATCATGCAGAGATATTATAATGGCCTTGCAAAAATAAGAAAGCATATATT
TATAAATTATTTTAAATAATAAATTATTTAATTTATTTAATCAACTTAAG
TCACAGTAGCTCAGGCAGATGAAGTACCAGCACAAAGCCAGATATTGTTA
AATTCAAAGCCTCACTACTCAGTTTAGAGTCCATTCTTTGTAAATAATGA
ATCTGAAATTACTGGTAAACTCCTGTTGTCCCCTTTCAAAAGACGGGAGG
TATGAAAAATGGGAAATGGATATTTCCCGTTTCTTTTCCGGGACGGGGAT
AATAATCCCGGAACAATAATTGGTATAAAATAAAGGTTTTTTTTCCCCCT
TTAAAGACTCCTTTTCTTTTTCGGAAAACCACGGCGCTTTTCCTTTCTCC
CCCTCTCTAAAACAGGTCGGATGGTTATTAAAATTTAGGGTATCTCTCTT
CTATTTGTAAAAACCCCTAATCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_c01.g1 MSMg01no217_c01.g1 CHROMAT_FILE:
MSMg01no217_c01.g1 PHD_FILE: MSMg01no217_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:27 2005
         (333 letters)



>mm_chr8_8248793_8249525
          Length = 733

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttaaagaacaaaccaaagcaatgcagaacaaaagaaagcagcagcaacaacaacaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttaaagaacaaaccaaagcaatgcagaacaaaagaaagcagcagcaacaacaacaaca 260

                                                                       
Query: 61  acaaaatacactcagaatgaaagtaagttcctatgaaattaattcaacaaagagggataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaatacactcagaatgaaagtaagttcctatgaaattaattcaacaaagagggataa 320

                                                                       
Query: 121 atatgccctaattattatctaggctgattcacctcttctgggaaatttccatggaagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgccctaattattatctaggctgattcacctcttctgggaaatttccatggaagtta 380

                                                                       
Query: 181 atgatgtattagatgatgcattaatgttaaagatacagtgagaaatcttactttttcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgatgtattagatgatgcattaatgttaaagatacagtgagaaatcttactttttcctt 440

                                                                       
Query: 241 tatataactttccaaagtaatgagttgacacaaccaaagaatatgtaggtgtttaatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatataactttccaaagtaatgagttgacacaaccaaagaatatgtaggtgtttaatcat 500

                                            
Query: 301 gcagagatattataatggccttgcaaaaataag 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 gcagagatattataatggccttgcaaaaataag 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)