BAC Information

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BAC

Clone NameMSMg01-217C23
Chromosome8 (Build37)
Map Location 5,957,158 - 5,957,433
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
Downstream geneLOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217C23.T7 (MSMg01no217_c23.b1)MSMg01-217C23.TJ (MSMg01no217_c23.g1)
ACCAG396800AG396801
length1,2261,258
length of high quality
(start - end)
63 (423 - 485)276 (525 - 800)
definitionCHROMAT_FILE: MSMg01no217_c23.b1 PHD_FILE: MSMg01no217_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:34 2005CHROMAT_FILE: MSMg01no217_c23.g1 PHD_FILE: MSMg01no217_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAATCATTCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTTCCCTCTAACATTCTCACACTCAAAACTCCACTCTGAGATAAAG
ACAGTGATCATCCTTCATGTCTCGGAAGTGGTCATTTCCTGTGTCCCCTA
CTTTCACTCCCTTTGGTGCTTCATGCACCTGCAACCCTAATATGCAGCTC
AGGACCATTCTTGAAATTCTTCAGTCCTTGAAATGTCCACTTGATAGTTA
GTATCCCAACCATTCTAATTGCTTTGCATACCTGGATCATCTTCTTAAAG
CCTATCTTAAAAATGCCTCTGGAATGACTATACTTGATTACCTTCCTATG
GATCACCACACTTTGATAATAATATATGGCCCAAGTAAAGATCTAACCAA
TAATATTTTACATAGTTGGGTGATATATTTATCCCCTTCTCTCGAGTCTT
AGATCTTTTTTCCCCCCCCCCTTATAACTATATATTTTTGCATAAAAGAT
TTTTAACAGATAATGACAAGCTGTGCAAAATACAATATGCTTTAGGATAT
GATTAGATGACTACCTTAAATTTGATTGAATCGATGCAAGGTAGCATTCT
ACTGCATTTTGATTTCTGGCTTGTATGCAAAAAAAACATAACAAAAAACC
CACAAAATAAACCTGCTTTCTTTGAGAAAAAATTGAAGCGTTCGTGGGTA
GTATTTTATTGTTGCTCCTTTATAATACTCTGGATAAAAAGGTATTTTAA
AAGACTTTTAAAAATGTATGCGGTATGTGTATTTATGCATACTTGAATGA
ATGTTACGTGCACCATGCATAAACTTCTGCTCTATGAGACCATTCAAGCT
GAAATCCTTTGCTACTGAACCTACCATCTTGCGCGCTCTAATTTCTCTTT
ACCATTGACCTATTTCTCCGCTCCCTACNAAGTATTCTTAAGATACTACT
TCAGGGGTAACCTATTAATAAATGGATTTATAACAATCCAAAATTTTTAA
GTAATAAAAAAGTGTTTGCCTTTCTAAACCATTTGATTGTTTTAAAATTC
CTTTTAAAAAGCCTTTAGGGAACTTTAAGGAACCTATTTCTAAAAAACCC
TTCTTAAGGTCTGTTAAAATAATACTTTGCAAGTTCATAAACATTCTTCT
TTAAAAAATTAATTTTTGGGAATAATATTTTTATATTTTTTGTTCTTAAC
TCCTTCGTTGCATTTATTTTTGAATA
NNTTTCTCATCGGAGCTGGGGCCCTGNCGTCCAXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCAGCCACTCAACATTATTGCTATTGATCTA
GGACGCAATGCTATTAGTTTTGCTTTTTGAAATAGAAGCCATGTATAACT
TAAAAAAAAAAGATCTGTCCAATGTTGTTCAATCTTTCGTTTTAAGAGTG
TACTGCAAATTTGTATCAAGTTGTAAATACTATACCTGTTCATTTTCTCC
ATTAGAAATAATATTCTTTTGTTTTCAAAAAACAATGAATCATTTAACTA
GAACCACTATAGGCATATCTAACGTAGCATCACAAGAAAATCGATTGCTG
ACATTTTAGGGATTCAACATGTCAGTGGAGAGCCATTTGCATTACAAATT
TTTGCACTCAAAAAATAATGTATTTAGCTTCTCAATAAAAATTAAAGTTC
TTTTTTCCCCCCCCCCACGTTATTTTGTTAATTCCTTAAAAAAGAATACA
CATCTCACATCTCTATGTTGGGATGAATTACTATAACTTGTAATAAGTTT
TGATTCATTATTTAAAACATTGCTTTTAATAGGTTCAAAGATTTTACATG
TAATACTTAAAGATTTACAAAAATTACATAAATTTCTTCAAAAGGAAATT
TTTGAAAATATACAAAGGAAAAAGATTAATGAAAAACAATTCTTAAAGTA
CTCAATTTGGATTCTTTTTTTCCCATTTTTTATTAGGTATTTAGCTCATT
TACATTTCCAATGCTATACCAAAAGTCCCCAATACCCACACACCCCCACT
TCCCTACCCACCCACTCCCCCTTTTTGGCCTTGGCGCTCCCCTGTAATGG
GGCATATTAAAGTTTGCGTGTCCAATGCGCCTCTCTTTCCAGTGATGGCC
GATTAGGCCTTCTTTTGAATACTATTACGGTTAGAGTCAGAACTCCCGGG
GACTGGTTAGTTCAAAAAGTTGTTCCCCCTAATAGGTTTGCATTTCCTTT
TATTTCTCTGGGAATTTTTCCTAATTCCTCCCTTTGGGGTCCCTTTGATC
CATCCTTTAATTGAATTGGGTACCACCCTCTTCTTTGTATTTCTTAGCCC
CCTGGTATATTCTCTAAAAAGAAAGATTAATTTTGGGTGTCTTTTTTAAA
AAAATTTTCTTATATTTAATATGGTGTACTCCTCCTTTATTATTGTTTAT
TTGTGCGGTCATTTTCCTAACAAGCTTATTCCCTCTCTAGCATAATCTTC
TTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_c23.g1 MSMg01no217_c23.g1 CHROMAT_FILE:
MSMg01no217_c23.g1 PHD_FILE: MSMg01no217_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:34 2005
         (276 letters)



>mm_chr8_5957044_5957719
          Length = 676

 Score =  526 bits (272), Expect = e-154
 Identities = 275/276 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattactataacttgtaataagttttgattcattatttaaaacattgcttttaataggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 390 gaattactataacttgtaataagttttgattcattatttaaaacattacttttaataggt 331

                                                                       
Query: 61  tcaaagattttacatgtaatacttaaagatttacaaaaattacataaatttcttcaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tcaaagattttacatgtaatacttaaagatttacaaaaattacataaatttcttcaaaag 271

                                                                       
Query: 121 gaaatttttgaaaatatacaaaggaaaaagattaatgaaaaacaattcttaaagtactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gaaatttttgaaaatatacaaaggaaaaagattaatgaaaaacaattcttaaagtactca 211

                                                                       
Query: 181 atttggattctttttttcccattttttattaggtatttagctcatttacatttccaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 atttggattctttttttcccattttttattaggtatttagctcatttacatttccaatgc 151

                                               
Query: 241 tataccaaaagtccccaatacccacacacccccact 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 150 tataccaaaagtccccaatacccacacacccccact 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)