BAC Information

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BAC

Clone NameMSMg01-217E12
Chromosome8 (Build37)
Map Location 106,365,303 - 106,365,708
singlet/doubletsinglet
Overlap geneLOC100041397
Upstream geneEG667618, LOC100041368, 1600027J07Rik
Downstream geneLOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217E12.T7 (MSMg01no217_e12.b1)MSMg01-217E12.TJ (MSMg01no217_e12.g1)
ACCAG396863AG396864
length1,311792
length of high quality
(start - end)
423 (28 - 450)45 (75 - 119)
definitionCHROMAT_FILE: MSMg01no217_e12.b1 PHD_FILE: MSMg01no217_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:43 2005CHROMAT_FILE: MSMg01no217_e12.g1 PHD_FILE: MSMg01no217_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCGCATTGGGCCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
ATGAAACTCTTAGGTAAATGGATGGAATTAGAAGATATCATCCTGAGTGA
GGTTAACCAATCACAAAAGAACACACCGAGCTTCCTTACTCAAGGACTAG
TTTCTTAATTGTCTCTTTGGTGCTCCCTGAAAGCAGACATATCTGGAGTA
TGCAGGGTTTGTTTAAGATTCCAACCCATGAAGCCCTATGAGAGAAAGTC
CTAGAGGACGGAACGAATCTACCCGGCTTAATGGTTGCCTATTGCTGTGG
GTTACTGGACCATTCTTGTTGGGTTCCTCTGAAGAGTACAGGCAACATGT
TCAGGATTATCCTTGCAAAAGACCAGTGAAAATGGGCACTAAGCCACATA
TCTTCACCCCTCCATGCTTGCGTAACACCTCTCCTACACTCTGACTTGTT
TGTTTTTTTCCCCCCCCCCCCGGNAATTTTATCAGGTACAAAAATAGAGG
GAGTTGTTGGTATGTAGGGGATATTGTTCGGTGACCCTACTGAGTAAGGC
CAGTACCAGCAGCACCATCTGCACGAGCCCCCTTTCTCCCTGACCTCCAC
TTATGTTGTTTCAGAATGTTCTACACTGTGTCCATCCTACCACAAAGCTT
TTTCTTCCCCTGTCTCAGGCCCATTTTTTCAACTCCTTTCCAAGAACTCT
TTGCTTCCTTTATGCCCAGCATCTGCCTTAGATAGAACACTTCTCCATGT
NCACTTGCATATTCACCCCTCTAGCATATGAAAGGCAAAAATCTTGCAGA
AGGCCCAATGGAAGGATTCTTTGTCCAAGCTTTTCTTTCTGTTGATAAGG
CTTTATCTCACAGATCTCTGTTTCCCGTGCTACAGATAAATCTCAGGTAT
TCAGTGGCTCCACTGCAGGTGGAATGATATTTCCGGAACGCCATCCTTTG
TTTTTCTGAATAGTCAATATTAAAAAGTAACTATCTTCTGGTCTGCTCTG
TCCCTTTGGGTTTCTATTTTGCCGACCTTTATTTTAATATTGTATGTTAA
CTTGCAAAGTTTGTTCTTCTGGTAGGCTCATTTGTATTTTGTGGTTCCCC
CTTATATTTTCAATTTTCCTTACTTCCAATAATTTCCCTTTCTTACTCCT
AATCCTTTTTTTTTTTGTGTTATTTCTCTATTTTNTCCTTTCCCTTATAA
TTATGGCTACACTCTTATATCAATCTTCCTCTTCTCATTATCCTCTGCTC
TCTCCCTCTTCTTAACATATTCTCATTCTATCTATCTTCAATTTTAATAC
TCTTTAATACA
ACGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCCCACAACTACCAGCAAAATCCAC
TTTGGTTTTATATTTGTGTGTGCCCGCAGTGTGTGTGTGTGTGTGTGTGA
ATAAAATTATGTTGGAATAGTCCTTTTTCTTTATATGATTACATATTGTC
CACACCTTACTCCTTCTTAGACCCTGTCATTTTCTATATTGTTCACCTAT
TCTACTCACTACCTTTCACAAAAATATTCTCCAAAAACACTCTCATCCCA
TCCACCAATTCTACCCTTTTCTTTTTTTTACTATCCCTTCTTCATTTTCC
AACCAACATCCATTCTTCAATAGTTTCCCCCCCCCCCCCCCCCCCTCTTA
TTTTTTTTTCCTTCCCCCTTTTTTCTCTTCTCCCCCCCCAAAAAAAAAAA
AAAAATCTCCCCTGCGCCCCCGGCACCTCTTCCTTTCCTTCCATCTCCTC
TTTCCTTCCCCCCTACTCTCTTTCCCCCTCTCACTCTTTTCTTCCCCACC
TTACCCTCCCCTCTTTTCCCCCCCCACCCTTCCTCCCCCCTCTTTATCTT
CCCTTTCCTCCCCCCTCTCCTCTTTCCCATCTTACCCCTTCTCCCATTTT
TACCCCCACCCATACTTTCCCCCACTATTCCCTGCCACATCTCTTACTCC
AACTCTTCTCTTTCCCACTTCTCCTTTTCCCCCCCCCTTTTTCTTCAATT
TCACCCTTACCTACCCCCCCTCCCCCCCCATTCCCATTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_e12.b1 MSMg01no217_e12.b1 CHROMAT_FILE:
MSMg01no217_e12.b1 PHD_FILE: MSMg01no217_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:43 2005
         (423 letters)



>mm_chr8_106365003_106365825
          Length = 823

 Score =  692 bits (358), Expect = 0.0
 Identities = 394/406 (97%)
 Strand = Plus / Minus

                                                                       
Query: 18  gaattcatgaaactcttaggtaaatggatggaattagaagatatcatcctgagtgaggtt 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 706 gaattcatgaaactcttaggtaaatggatggaattagaagatatcatcctgagtgaggtc 647

                                                                       
Query: 78  aaccaatcacaaaagaacacaccgagcttccttactcaaggactagtttcttaattgtct 137
           | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 646 acccaatcacaaaagaacacaatgagcttccttactcaaggactagtttcttaattgtct 587

                                                                       
Query: 138 ctttggtgctccctgaaagcagacatatctggagtatgcagggtttgtttaagattccaa 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctttggtgctccctgaaagcagacatatctggagtatgcagggtttgtttaagattccaa 527

                                                                       
Query: 198 cccatgaagccctatgagagaaagtcctagaggacggaacgaatctacccggcttaatgg 257
           ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 526 cccatgaagccctatgagagaaagtcctagaggacagaacaaatctacccggcttaatgg 467

                                                                       
Query: 258 ttgcctattgctgtgggttactggaccattcttgttgggttcctctgaagagtacaggca 317
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 466 ttgcctattgctgtgggttactggaccattcttgttgggttcctctgaagagtataggca 407

                                                                       
Query: 318 acatgttcaggattatccttgcaaaagaccagtgaaaatgggcactaagccacatatctt 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 406 acatgttcaggattatccttgcaaaagaccagtgaaaatgggcactaagccacatatccc 347

                                                         
Query: 378 cacccctccatgcttgcgtaacacctctcctacactctgacttgtt 423
           ||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct: 346 cacccctccatgcctgggtatcacctctcctacactctgacttgtt 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)