BAC Information

Click to search

BAC

Clone NameMSMg01-217E22
Chromosome8 (Build37)
Map Location 28,637,518 - 28,637,740
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1, Got1l1, Adrb3, Eif4ebp1, LOC732482, Tex24, Chrnb3, Chrna6, 4921537P18Rik
Downstream geneGm1698, EG666422, LOC666430, EG666446
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217E22.T7 (MSMg01no217_e22.b1)MSMg01-217E22.TJ (MSMg01no217_e22.g1)
ACCAG396879AG396880
length1,253725
length of high quality
(start - end)
432 (29 - 460)229 (130 - 358)
definitionCHROMAT_FILE: MSMg01no217_e22.b1 PHD_FILE: MSMg01no217_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:47 2005CHROMAT_FILE: MSMg01no217_e22.g1 PHD_FILE: MSMg01no217_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGCTCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CATTTCATTGTGATCAGAGAGTAGGTATTGTACAATGTCTACCCCATCAA
ATGTATCCATCCTTTTATGGTCCATGACACGGTCTAATGTGGAGTACTCT
ATCCACTCCTATGAGAAGCGTGTTCTGCTGCCCCGTGGATACCTGCAGAG
TTTCCTTGATTTATTGTGGTGCTCAGGTGGAGTCTTGCCTTTCTACCTTG
TTATTCCAGATGGTGATGGAAGGGTGTCCTTAGCCTTTCCAGCTGATTCT
GTTGTTTCCACTGTGTTTTCTGTGTTAGCTTCTGCCAGTTTTACCTCATG
CAGTTGGTACCCTGCCATTTGATACATACATGCTTGTGACCATTCTGTAT
TTTTGTTACCCTGGCTGCTTCATATTTCTTAAATGTTTATTGATGGTTTG
TTTTTTTTTCCCCCCCCCGNNAANANNAANATAGATAAAAAAAAAAGGGG
GGNNNNNNNNAANNNNANANNNANNNANNAGANATTTTCTTTATATANAT
TTNAAATGGTATTNNAAAAGTNTTTTATATTTTCNTTCTGNTTTGTTCTC
CTACCCACCCACTTCTACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGC
ATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAGTGATGGTCGACT
AGGTCATCCTCTGCTACACATGCAGCTAGAGATATGAACTCTGGGTGTAT
TGGTTTAGTTCATATTGTTGTTCTACCTATAGGGTTACGGACCCCTTCAG
CCCCTTGGCTGCTTTCTCTTAGTTCTCCATTGAGGGGCCTGTGTTCCATC
TTATAGATAGATGACTGTGATCATCCATTTCTGTATTTGTCAGGCTTTGG
TTTATTCTTTTTTTTATACGTTTATTACGGGTTCCTTTCAGTAAATTTTT
TTGTCTTATGCAATAGTGTTCGGTTTTGGTGTTTGATTTTTGTATGTATT
TTTGGTTTGTTTATTTTCTTGTTATATACCATCCTTTTGTTTTAATTTCT
AATTTTTTCATGTGAATTCTTTTATTGGGTAATTTCTTCTCTTCTTTTTT
TGTGATTGTTATTTTTCTTCTTTTGTTTTTTCTCTTTATTATTTTTACTT
CTTTGTTTTTTTTAACATTCTTTTTCTTTAATCATTTTTCGCTATTTTTT
TTCTTCTTTGTTTTTCTTGTTTAATTATATTTATATTTCATTTTTTATAC
TCT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGCCCAATTCAAAATCAAGAAGACTGTGTAGATTTCACGA
TTTTAAATTTCTTATTCTAACAAATCAATGTTATAAAATTTACCTGCACG
GTGTAATTTTGCCTGATCAACTGGTGGTGCTTCTCTTGGAAAAGAATCTC
TCTCTTCAATGGGAAGCTATAGAGTTTTTGAAAGAAGGTATTCAGTAACA
ATTGTGTGTTTCAAACAGCACAATTTTAATAACTCGGGTAATATATAAAC
TTATTACCTTCAATTGATTATATTCCTTAGGACAGTCTAGAAAAAAAATC
AGAGATACTTATTATTAATATCGCCCCCCCCCACAAACTTGACCACACTT
TTATAATTATGGTCAAAATATTCTTTATAAAATAAATTTATAATGATTGT
ACTAATTTTGGAATTGTGGCAAATTTTTACTTTTTGTTTCGTTCTTGAAT
GAAATATCTACTGAAAAACTAATAAACTACATAATTTTCATTAAACTTGA
CAATTTTCAAATTAACATTATGAGCTCAGAGAATTTTTCTTTTAAACAAT
TTATGTGATTTCATTAAGGTGGCATTTCTAATGGGTTCGAGAATAAAATG
TTTCTAAAATTTCAGGATAAAATCACGAAACCAGGATAATATTTCAATAG
TCAAAACTGATTATACCATGTGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_e22.g1 MSMg01no217_e22.g1 CHROMAT_FILE:
MSMg01no217_e22.g1 PHD_FILE: MSMg01no217_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:47 2005
         (229 letters)



>mm_chr8_28637314_28637940
          Length = 627

 Score =  358 bits (185), Expect = e-103
 Identities = 215/225 (95%), Gaps = 2/225 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   taaaatttacctgcacggtgtaattttgcctgatcaactggtggtgcttctcttggaaaa 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 427 taaaatttacctgcacggtgtaattttgcctgattaactggtggtgcttctcttggaaaa 368

                                                                       
Query: 65  gaatctctctcttcaatgggaagctatagagtttttgaaagaaggtattcagtaacaatt 124
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 367 gaatctctctcttcaatgggaagctatatag-ttttgaaagaaggtattcagtaacaatt 309

                                                                       
Query: 125 gtgtgtttcaaacagcacaattttaataactcgggtaatatataaacttattaccttcaa 184
           |||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||
Sbjct: 308 gtgtgtttcaaacagcacgatttaaaaaactcaggtaatatataaacttattaccttcaa 249

                                                        
Query: 185 ttgattatattccttaggacagtctagaaaaaaaatcagagatac 229
           ||||  ||||||||||||||||||||| |||||||||||||||||
Sbjct: 248 ttgaacatattccttaggacagtctag-aaaaaaatcagagatac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 627
Length adjustment: 9
Effective length of query: 220
Effective length of database: 618
Effective search space:   135960
Effective search space used:   135960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)