BAC Information

Click to search

BAC

Clone NameMSMg01-217I13
Chromosome8 (Build37)
Map Location 42,263,685 - 42,415,978
singlet/doubletdoublet
Overlap geneFgl1, Pcm1
Upstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1
Downstream geneAsah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353, EG620772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217I13.T7 (MSMg01no217_i13.b1)MSMg01-217I13.TJ (MSMg01no217_i13.g1)
ACCAG397032AG397033
length1,3081,281
length of high quality
(start - end)
347 (473 - 819)331 (70 - 400)
definitionCHROMAT_FILE: MSMg01no217_i13.b1 PHD_FILE: MSMg01no217_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:08 2005CHROMAT_FILE: MSMg01no217_i13.g1 PHD_FILE: MSMg01no217_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,415,648 - 42,415,978)(42,263,685 - 42,264,013)
sequence
NNNCCCACATTGGGCGCATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CATTGACAGAACATCTCCTTTTTCAAAGTAGGCTTAGATTTTCTAAGAAG
TAATAGTATATTTTCAAAAACTAAACTGGCAAGATCATGATTTTTCAATA
TAAAATTAAAATTGGTAACTTTTACCAGGTTCCCTCAGTATCTGAGAATT
TCCAGCTAATTCTTCTGTCTGCATTTCACATATTTCACCAGATAAATGGT
TTTTCTGTTCTTCTTCTATCATTTTCTTCCTTAGCTCTTCCTTTAGAACA
AAAATTAAAAATATAATTTTCATCTCAGTATTTGTTATAAAGGCAAGCTT
AGTTGAAGAGAGCCCCATACCTCTGAATAGACTGTCAGTTTGAGCGGCAA
ATCTTCAACTTTCACAAAGTCTTCTTCATCCGACTTTTGACTTATGTTAC
CTTATTTTGCTCCCCCCCCCCTAAGTTAGAGATAATGAAAAAAAAAAATA
ACTACGGAACAAAACAAAAATCACAGCATGAGAGAACAAATTCCTGCAGG
TCTCCGACCTTCACACACAATAGGACACTTGTATGTACATGCACACTCTC
GACTAATTAATTAAATAAAATAAAATATTTTTGAAAGGGGTTGGAGAAAC
GACTCAGTAGTTAACCTCACTGGCTGCTCTTCTAAAGGACTCAGATTCAA
TTCTCAACACGGTGGCTCACAGCCATCTGCAACTCCAATTCCAGGGGAAT
CCAATGCCCACTTTTGACTTATATGGGCTCAGGACACATTCACATAAAAT
AAATAAATATTGCAAAAATGTTTTAAAGATTAAATCAAGCAATTTCAGAT
CTTTGAATACTTAAATGTACACAGCAGGAAAATAAAGCCATTTAAAAGTG
TAAGTTTCGGGGCTGGGGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT
TCTTTCGAAGTCCAGAGTTCAATTCCCACCAACACATGGTGGCTTACAAC
CATTCGTAACAAGAATTGACTCCTTCTTCGGGGGGGTCTGAAAAAAGCTA
CAGTGTAATTACTATTAAAAAAAAAAAAAAATCTTTAAAAAAAAAAAAAA
GGGAAAGTTCTTCGGGAGGGTTTTGAAAATTCCCCTTTTTAGAAAACATA
AAAATTGTTTATTTGAAAAACATTCAAAAAACAATTCTTTTTATTTTTTT
TAAAAGATGTGANGGCCCAAGGTGGGAGGACTAACGACCCCGCGATGTGT
GTGGTCTATTCCTTCCATATGTGCCCCCCCCCCCCAATTTTAGAACCTCC
AATCAAAC
NNGGATCACGAGAGGCTGGGGCGCCGGTXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTAGTTCAAGCTGGAAAGGTCTTTGATAAT
GCTAAGTGTTGAATATTACTGTCATAGGTGCAGGTGGAAGCAATGTTATA
GAACACTGCTATAATTAGAAAGACCTAGAAACTGGTGCCAAACCCCTCCG
AGTTACATTTTGGAAGGGGATCCTCTGTGCCATTTTCTCCCTGGGACTCA
GTCAGCTTTTTTGTTATGACTGAATACTTAATTCCCTCTTTTATCTCCCT
TGAAAGGTTGGAGCTTGTCTTGGACTTGCCTCTGGTGGAGTGTAGTTTTT
TACTGGGTGGATGTGCTTTTCCAGCCAAGGTTTAAAATGAAGAGCCGGTA
TGTTTCAGAACACAGAGTACACGTAGCCTTAGGTTTGCAATGACGGTTAA
TTTTTTTTCCCCCCCCCCCCCATGAAATCCCGGTGCCCAAATAAAAAGAG
ATCTCAAAAAAAGCAGATAAGTTCTTGATGTGTAAGATAGAGTAGCTTCT
TTCAGAGATAAGGGCTTTGTGTTGTCCCTCAAACAAAACGCAAAAGGTCG
TGTGAAACCAAAGTACATAAAAGAGATTAAAAATGGAGCCGTGGTTTAAG
AGAGGAGCTGTGATGAAAGGGAGTTTTTCTGATCCCTGAACGGACCCTGA
TGCATGTGGCCTGAGCCCAAGGCTCCTTGACCACTGTTACCAGATAATCC
CTAAAGCGCATTTTGTCATCAAACCATCAAGTATTTTAGATGTCAGTGAC
ATTAAAGACCCAGGCTGCCTCAGGGCTCCTGTCAATAGTGTTTACCCAGA
CTCGGTTTCATTTTATATGCTCTCTTCCATCCTCTGTCTTCTGACATTTT
CAGTCATGCTCAGGGCCACATAGCACGTTGTTACACTATTTCCTCTGTCC
GCACCGTCTTCCTTTGCAAATCCCATCATCACAGTCAGTTTTTCCGGAAG
TGCTAACAGAATGCACGTGCCGGGGTAAATCTTTGCGCCCTCGAAGGCTA
ATATGCTAATAACAAATCTTCTTTGTTTTCTCTTGAAACCCTTGGGTAAA
ACTTGTTAAAACCTTGTTAACTCCCCCCACCCCATATGGTAAATGTTAAA
CCCCAATTTCTGATGTTTACTTGTTAAAAAAAACCGAAGCTTCCGGTGAT
TTTTTGCGAAATTGGGGGTTATTTCTTCTCCGCCGACTCTGTATTCCTCT
GGTAGAGTCCCTTTTTNTATATCTATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_i13.b1 MSMg01no217_i13.b1 CHROMAT_FILE:
MSMg01no217_i13.b1 PHD_FILE: MSMg01no217_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:08 2005
         (347 letters)



>mm_chr8_42415648_42416394
          Length = 747

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagttagagataatgaaaaaaaaaaataactacggaacaaaacaaaaatcacagcatgag 60
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 331 aagttagagataatgaaaaaaaaagctaactacggaacaaaacaaaaatcacagcatgag 272

                                                                       
Query: 61  agaacaaattcctgcaggtctccgaccttcacacacaataggacacttgtatgtacatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agaacaaattcctgcaggtctccgaccttcacacacaataggacacttgtatgtacatgc 212

                                                                       
Query: 121 acactctcgactaattaattaaataaaataaaatatttttgaaaggggttggagaaacga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 acactctcgactaattaattaaataaaataaaatatttttgaaaggggttggagaaacga 152

                                                                       
Query: 181 ctcagtagttaacctcactggctgctcttctaaaggactcagattcaattctcaacacgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ctcagtagttaacctcactggctgctcttctaaaggactcagattcaattctcaacacgg 92

                                                                       
Query: 241 tggctcacagccatctgcaactccaattccaggggaatccaatgcccacttttgacttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  tggctcacagccatctgcaactccaattccaggggaatccaatgcccacttttgacttat 32

                                          
Query: 301 atgggctcaggacacattcacataaaataaa 331
           |||||||||||||||||||||||||||||||
Sbjct: 31  atgggctcaggacacattcacataaaataaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no217_i13.g1 MSMg01no217_i13.g1 CHROMAT_FILE:
MSMg01no217_i13.g1 PHD_FILE: MSMg01no217_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:09 2005
         (331 letters)



>mm_chr8_42263485_42264215
          Length = 731

 Score =  636 bits (329), Expect = 0.0
 Identities = 329/329 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagttcaagctggaaaggtctttgataatgctaagtgttgaatattactgtcataggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagttcaagctggaaaggtctttgataatgctaagtgttgaatattactgtcataggt 260

                                                                       
Query: 61  gcaggtggaagcaatgttatagaacactgctataattagaaagacctagaaactggtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggtggaagcaatgttatagaacactgctataattagaaagacctagaaactggtgcc 320

                                                                       
Query: 121 aaacccctccgagttacattttggaaggggatcctctgtgccattttctccctgggactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacccctccgagttacattttggaaggggatcctctgtgccattttctccctgggactc 380

                                                                       
Query: 181 agtcagcttttttgttatgactgaatacttaattccctcttttatctcccttgaaaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcagcttttttgttatgactgaatacttaattccctcttttatctcccttgaaaggtt 440

                                                                       
Query: 241 ggagcttgtcttggacttgcctctggtggagtgtagttttttactgggtggatgtgcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagcttgtcttggacttgcctctggtggagtgtagttttttactgggtggatgtgcttt 500

                                        
Query: 301 tccagccaaggtttaaaatgaagagccgg 329
           |||||||||||||||||||||||||||||
Sbjct: 501 tccagccaaggtttaaaatgaagagccgg 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)