BAC Information

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BAC

Clone NameMSMg01-218C06
Chromosome8 (Build37)
Map Location 105,497,235 - 105,497,552
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh11, EG667618
Downstream geneLOC100041368, 1600027J07Rik, LOC100041397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218C06.T7 (MSMg01no218_c06.b1)MSMg01-218C06.TJ (MSMg01no218_c06.g1)
ACCAG397420AG397421
length768724
length of high quality
(start - end)
326 (43 - 368)296 (125 - 420)
definitionCHROMAT_FILE: MSMg01no218_c06.b1 PHD_FILE: MSMg01no218_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:04 2005CHROMAT_FILE: MSMg01no218_c06.g1 PHD_FILE: MSMg01no218_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTAAGGAAGAATACTGCTTTCCACAGTCTACAGTTGAACTGAAGAGAC
ACAAGTGCACACAGATTATTAATTAAATTAGAGTTTATTTTAATATGACA
ACATCTTTGTCATCTAACATTTTCTCTCTAACTTGTTAGGCTACTATTTA
AGAACCAGAATTAGCAACAGCAAGCCAAACCTCAACTCCATTATAATCAT
AAAACCATAATTCATGCTTGCATTACAAAATTGTAAAGAATGCATGTGGG
TGTGTTCATGTGTGTATGTGTGTGTATGTATTGTCTATTGTGCATACATC
TGTGCACAAATGTATTTTTTTTACCCCCCACCCCGCCAAAATGATATTAG
AATGTACACTTGTACTCACCCACATAAACTCTTACAAAGATGATTACTCT
CACTCCCCCTCTCTTACACACACCCATACACACACACACACACTCTCTCA
CACACACACACACTCACACTTCACTACTCACACAATTTCCAATATACTGA
GGTTACACAAATGTTTAGAATTATGTAAATGTAGACAAACTCTCTTTTTT
ATTACTTTTATTTTGTTACAGTCCAGTTGTTGCTCTCTTCCCTGTCTGCC
CTCTCAAGTAGTCATCATTCCATTCTTCTTCCCCCTGTCTTCAAGAGTTT
GACCACCCCCCACCACGGTTCCCTCACTCCCTGGTGACTCTATTTTTTCG
AGGGTTACGTGTATCTTT
ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGGCGAAAAAAGAGATAGAAACACTGAAGAGCGCACAAGA
GGACATGGAGTTGGAATTGAACCACTCCGTGATTCAAATAAAAACTCCAC
CAGAGAACTCCTAAACCTGATAAACAGCTTCAGTGAAGTAGCTGGATATA
AAATTAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAG
GCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAA
TATAAAATACCCTGGTGTGACTCTTACTAAGGAAGTGAAAGATCTGTATG
ATGAGAACTTCAAGTCTCTGAAGAAAGAAATTATAGAAGATCTCAGAAGA
TGGAAAGATCTCCCATGCTCACGCATTGGCAGGATCAATATAGTAAAAAT
GGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAA
TTCCAATTCAATTCTTCTACGAATTATAAAGAGCATTCTGCAAATTCATC
TGGAATAACAAATGACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAG
AACCTCTGGTGGAATCACCTTGCCTGACCTAAAGCTGTACTATAGAGGAA
TAACTGATAAAAACTGTCTGGTACTGATAGAAAAGAAGATCAATGGGAAC
ATAATTGAAGAACCCATAAATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_c06.b1 MSMg01no218_c06.b1 CHROMAT_FILE:
MSMg01no218_c06.b1 PHD_FILE: MSMg01no218_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:04 2005
         (326 letters)



>mm_chr8_105497105_105497830
          Length = 726

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaggaagaatactgctttccacagtctacagttgaactgaagagacacaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaattcctaaggaagaatactgctttccacagtctacagttgaactgaagagacacaagt 389

                                                                       
Query: 65  gcacacagattattaattaaattagagtttattttaatatgacaacatctttgtcatcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcacacagattattaattaaattagagtttattttaatatgacaacatctttgtcatcta 329

                                                                       
Query: 125 acattttctctctaacttgttaggctactatttaagaaccagaattagcaacagcaagcc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 328 acattttctctctaacttgttaggctactatttaagaaccagaattagcaacagcaagtc 269

                                                                       
Query: 185 aaacctcaactccattataatcataaaaccataattcatgcttgcattacaaaattgtaa 244
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 268 aaacctcaactacattataatcataaaaccataattcatgcgtgcattacaaaatagtaa 209

                                                                       
Query: 245 agaatgcatgtgggtgtgttcatgtgtgtatgtgtgtgtatgtattgtctattgtgcata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 agaatgcatgtgggtgtgttcatgtgtgtatgtgtgtgtatgtattgtctattgtgcata 149

                             
Query: 305 catctgtgcacaaatgta 322
           ||||||||||||||||||
Sbjct: 148 catctgtgcacaaatgta 131


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)