Query= MSMg01no218_d03.b1 MSMg01no218_d03.b1 CHROMAT_FILE:
MSMg01no218_d03.b1 PHD_FILE: MSMg01no218_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:08 2005
(276 letters)
>mm_chr8_111771465_111772142
Length = 678
Score = 509 bits (263), Expect = e-149
Identities = 270/273 (98%), Gaps = 2/273 (0%)
Strand = Plus / Plus
Query: 5 gaattctttgtgcatattaatattatgcatgttttccatgtgactcctcacttgccctca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtgcatattaatattatgcatgttttccatgtgactcctcacttgccctca 264
Query: 65 ccccatcctttgaattcatttaaataaaaataatttatgtggacattccttcagtcggga 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 ccccatcctttgaattcatttaaataaaaataatttatgtggacattccttcagtcagga 324
Query: 125 ttttct--ttctctttcttaaagacatccataacactcagttgatgctttgcatccaaac 182
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttctctttctctttcttaaagacatccataacactcagttgatgctttgcatccaaac 384
Query: 183 caagtcgttatgcctttgcatgtcattagagctttataaagaacaacagcgacatctgca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caagtcgttatgcctttgcatgtcattagagctttataaagaacaacagcgacatctgca 444
Query: 243 tgtgccgaggtgccaggagataggagaaaaaaa 275
|||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgccgaggtgccaggagataggagaaaaaaa 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 678
Length adjustment: 9
Effective length of query: 267
Effective length of database: 669
Effective search space: 178623
Effective search space used: 178623
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no218_d03.g1 MSMg01no218_d03.g1 CHROMAT_FILE:
MSMg01no218_d03.g1 PHD_FILE: MSMg01no218_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:08 2005
(286 letters)
>mm_chr8_111862887_111863572
Length = 686
Score = 522 bits (270), Expect = e-153
Identities = 282/286 (98%)
Strand = Plus / Minus
Query: 1 ctaattgtgaatggctatgactgaatgtttactttttctatttatttaccccaggtttaa 60
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 486 ctaattgtgaatggctatgactgaacgtttactttttctatttatttatcccaggtttaa 427
Query: 61 tttaaaagggaaggctgctagttttcaaactctgataattgtgcattcctgttttctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttaaaagggaaggctgctagttttcaaactctgataattgtgcattcctgttttctcac 367
Query: 121 atgtagtttttccttaattttcactatttgctttcttatgagtctagttttagatgcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgtagtttttccttaattttcactatttgctttcttatgagtctagttttagatgcatc 307
Query: 181 ctggagtttcacaatataagctctgcgtggcaactagttacataaatgctatttattcgt 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 306 ctggagtttcacaatataagctctgtgtggcaactagttacataaatgctatttattcgt 247
Query: 241 ctttctgtaaacttctcattattgtctttcgtgtccaccaggtctt 286
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctttctggaaacttctcattattgtctttcgtgtccaccaggtctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
