BAC Information

Click to search

BAC

Clone NameMSMg01-231L01
Chromosome8 (Build37)
Map Location 40,795,176 - 40,795,465
singlet/doubletsinglet
Overlap genenone
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1
Downstream geneEG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231L01.T7 (MSMg01no231_l01.b1)MSMg01-231L01.TJ (MSMg01no231_l01.g1)
ACCAG398429AG398430
length695718
length of high quality
(start - end)
323 (4 - 326)290 (58 - 347)
definitionCHROMAT_FILE: MSMg01no231_l01.b1 PHD_FILE: MSMg01no231_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:02 2005CHROMAT_FILE: MSMg01no231_l01.g1 PHD_FILE: MSMg01no231_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGATCCGCGGAATTCCATTATGCACATCTATAAGTACACAAATCACTT
GCACATCATCATACAATACACATATACAACACACATATACTCACACAGTT
TATATTATCTCTCTTAGATAGACACACACACATATAAAACATATACCTAT
ATAATACATATGCAGAAATATCACACACATATTCTAACATACACAAATCA
CATAGACACACATACATATTACACATGTACACACACTGCACACATGCACA
CACACACATACTATTAGTACTTTTCCTCTAGAAAAGGCTGACAAATACAA
TTGCTTATTATTTTGCTCTGCTCTAATTTTTCTGGACACGCCACTCAGTA
TAACTAATAAAACTTATGGTTTATCTCATTTTTGAAGATGTACTTTCTTC
AGATGTATCAATATTACACATTGTACCTATATAAATACTTGCTTGATATT
ACTTGATAAATAAACGTCTCTGGTTTTTTATCAGTTAAAATAAGTATAGG
ATGGAGGAAAACATTGCTTGAGCAACTTGACATAGACTCTCTGTACAGAA
TTCCTCCGTGAAGCATATGAATTGTCTAGTTGAAGCACATGACTTGTTGG
AACGTTTTACAAAATTGCCAGACCTTTCCCCGAACATTATTAACCCAGCG
ATACAACATGTACCCCTAGGCTTTGGCTCCCTCCCTATCGGGACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTATTTTAAAAGGAGGCCTTAAAGAAATAACATGGTTCACTCGT
CTGATCACATGACTTCTGGCAAAGCACAACGATGAGCTATGTCTGATTGA
ATCTATAAAACATCTGAAATACAATTTAAATAAAATCAAAGAAAGTAATT
ATAGATATATGCAGACTATGTGACATAATAATTGAACAAAGTAATATATT
ATAAATTTAAGTATTATATATAATTGAATCTTCTGTTATGTAAAATGTAA
ATTAAAAGAAATGTATGCTTTAAATCAAAGCATTTGGGGTTAAATAATCT
TTATACATCCCACCCCCCCCTTTAGATCTGTAAAAATAGAAACGCAGAGA
TTATCACCCCACTACAGGTTTAGGCAAATATATTTCATTGTGCATTATCT
TAATAATTTAAAGAACTGACCAACTGACTATGACTATAACATATAAAATC
ATTTGCTTTCTTTGTGATCTTACCAAATGGTGAATAAGCTAGAGGCTAAT
AACGCACTATGCTCCCTTGTCTACTCCGCTGGACAGATTTACCAGTAACA
TATGCTGGTCATGTCCAAGCCTTCCACAGTCCATAGTGTATGCAGAGGCA
ACTTTCGACATTCTTCTCGCCGACTGACAGTAGGTCATTGCATGACCAAC
CGCTGGCGCCTCTGTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_l01.g1 MSMg01no231_l01.g1 CHROMAT_FILE:
MSMg01no231_l01.g1 PHD_FILE: MSMg01no231_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:02 2005
         (290 letters)



>mm_chr8_40795082_40795771
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattttaaaaggaggccttaaagaaataacatggttcactcgtctgatcacatgacttct 60
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 384 tattttaaaaggaggccttaaagaaataacatagttcactcgtctgatcagatgacttct 325

                                                                       
Query: 61  ggcaaagcacaacgatgagctatgtctgattgaatctataaaacatctgaaatacaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggcaaagcacaacgatgagctatgtctgattgaatctataaaacatctgaaatacaattt 265

                                                                       
Query: 121 aaataaaatcaaagaaagtaattatagatatatgcagactatgtgacataataattgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaataaaatcaaagaaagtaattatagatatatgcagactatgtgacataataattgaac 205

                                                                       
Query: 181 aaagtaatatattataaatttaagtattatatataattgaatcttctgttatgtaaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaagtaatatattataaatttaagtattatatataattgaatcttctgttatgtaaaatg 145

                                                             
Query: 241 taaattaaaagaaatgtatgctttaaatcaaagcatttggggttaaataa 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 taaattaaaagaaatgtatgctttaaatcaaagcatttggggttaaataa 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)