BAC Information

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BAC

Clone NameMSMg01-232D20
Chromosome8 (Build37)
Map Location 41,055,882 - 41,056,232
singlet/doubletsinglet
Overlap genenone
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959
Downstream geneEG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232D20.T7 (MSMg01no232_d20.b1)MSMg01-232D20.TJ (MSMg01no232_d20.g1)
ACCAG398809AG398810
length729735
length of high quality
(start - end)		321 (45 - 365)352 (384 - 735)
definitionCHROMAT_FILE: MSMg01no232_d20.b1 PHD_FILE: MSMg01no232_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:41 2005CHROMAT_FILE: MSMg01no232_d20.g1 PHD_FILE: MSMg01no232_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTCCTTTGCAACCTTAAGATGAAGATGTAGATTTTGGCTCTTCT
GGCACCAAGTCTGCCTGCAGGCTGCTATGTTTCCCACCATGGAACCATGG
AAACTGTAAACCAGCCCTAATTAAATGTTTGCCTTTATTTGAGTTGGCTT
GGTCATGGTGCTCTTTACAGCAATAAAACCCTAATACAACCCTATTTTTA
ATTGGATTATTTGGTTTGTTGTTGTCTAATTCTCTGTGCTTTATATATTT
TGGATATTAGCCATTCATCAGATGGTCTAAAATCTTTTCCCATTCTATAG
TTTACCATTTTCCCTCTATTCTGCCCCCCCCCCTTACATAAGCTACTCAG
TTTCATGAGGCCCCATTTATCAATTGCCAGATTTAGTGCCTGCACAACTT
ATTATCTGTTTAGGAAGTTATCACTTGTGCCAATGTGTTCAAGGTTAATC
ACTCACATTGTCTTCCACTCCTGGGTATATACCCTAAAGACACTCTATCC
TATCACAAAGACACTTACTAAACTATGCCCAAAGCAACTTTATTTGTTAT
AAAGAGAAACTGTAAACAAACCTAGATGTCCTTCCACCTAAGAATAAAAT
AAAGAAATGTGGAACAATTACCGAAGAAAAATTATTCAGCTGTTTTGTTC
TTTTAAATGGCATCAAAAATTTGCAGACA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATGCAATAATGTATGTCTATATGTAC
CTCACATCTGCAATAGGTAAGTGACATGTTGATAATTTTCATATACAGGG
GTTAATGAGATTAAGTAAATTAACTTGGTTATCATCCTTAAATCTTTTTT
ATTTTCAGGTTTATGTAACTTGATTAATACTATACTCTTCTCATTTCTCA
ACTGCTTGTGATGTTAAGCATTTGTTTTGCTAAATCCTTATATGTTTTCA
AGTATTTAGAGGGCAATGTATGCTGTCAAACAACAGATACATTATTGCTG
TAGCTCGGGCTGTTGTTTCCCCCCCCACTCCTTACTAATGATTTCTATCA
CAAACTTGGAATTTCAGCCTCAATCACGCTTATGACTGAGCATCAGACCT
TTTCTGTAATACTGAGCCCTCTCAAGCGATAGTCATCAGTAATACAGGAG
CATATGAGATTAATTTGTATTTAAATGTAGAAAAGCATGATGTAGTAGCC
CAGTACCCTTTATTATCATCAGGAAACAGATGACTAAAATCATGTGACTG
AGATACCAACTCCCTTACAATTTCATATTCTAATTTAGCCTCTTACATTT
TTATGGTAAATTAACAGAGAGAAATGCACATTTTTTAAATCATAACCTCC
TTTCCATATTCAATTAGAGCATAAAGGAATTTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_d20.g1 MSMg01no232_d20.g1 CHROMAT_FILE:
MSMg01no232_d20.g1 PHD_FILE: MSMg01no232_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:41 2005
         (352 letters)



>mm_chr8_41055682_41056433
          Length = 752

 Score =  679 bits (351), Expect = 0.0
 Identities = 351/351 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaatgatttctatcacaaacttggaatttcagcctcaatcacgcttatgactgagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 actaatgatttctatcacaaacttggaatttcagcctcaatcacgcttatgactgagcat 492

                                                                       
Query: 61  cagaccttttctgtaatactgagccctctcaagcgatagtcatcagtaatacaggagcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cagaccttttctgtaatactgagccctctcaagcgatagtcatcagtaatacaggagcat 432

                                                                       
Query: 121 atgagattaatttgtatttaaatgtagaaaagcatgatgtagtagcccagtaccctttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atgagattaatttgtatttaaatgtagaaaagcatgatgtagtagcccagtaccctttat 372

                                                                       
Query: 181 tatcatcaggaaacagatgactaaaatcatgtgactgagataccaactcccttacaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tatcatcaggaaacagatgactaaaatcatgtgactgagataccaactcccttacaattt 312

                                                                       
Query: 241 catattctaatttagcctcttacatttttatggtaaattaacagagagaaatgcacattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 catattctaatttagcctcttacatttttatggtaaattaacagagagaaatgcacattt 252

                                                              
Query: 301 tttaaatcataacctcctttccatattcaattagagcataaaggaatttgg 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttaaatcataacctcctttccatattcaattagagcataaaggaatttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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