BAC Information

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BAC

Clone NameMSMg01-232I13
Chromosome8 (Build37)
Map Location 54,380,405 - 54,380,673
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107, Vegfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232I13.T7 (MSMg01no232_i13.b1)MSMg01-232I13.TJ (MSMg01no232_i13.g1)
ACCAG399011AG399012
length761717
length of high quality
(start - end)
285 (45 - 329)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no232_i13.b1 PHD_FILE: MSMg01no232_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:02 2005CHROMAT_FILE: MSMg01no232_i13.g1 PHD_FILE: MSMg01no232_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCTGTCCTTTACACTAGGAGACGTGAGAAACACATTTTAACGAGT
AACTTTTGTTTTTAATGCTCCCTAAGATTTTGCAAGGGTGCATCTTAAAT
GTGATGAACTAATGAATCTGGAACAGAAAATCTAAGAGGATTTAATATGA
AAGAGTGTTATAGTTATCAACTTCAGCTTCCCACAATTTTTTAAATTTAA
TTTTATTTGTAATTGGTTTTTTTCTGTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTTATTATTGCTCCCCTTTCTCTCCCT
CCTTTTTTCCCTCCCCCCTCTCTTTTTTTTNTTTCCCCTCTTTCCCTCTC
TTTTTTGTTCCCCCCCTCCCCTATTTAAACTTTTAAACTTTATCTCCTTT
ATTCCATTCCTCTTCTCCTTCACAATCCCCTCTTTCATTCCTTCTCTTAT
TTTACTTTATACTTCACTCTTCTCTTCTTTTTCCTACCTTCCTTATTCAC
ATTTTTTTCTCACTTCTTTCTCCCTCTTCCCTTTTACCACTTTTTCACCC
TCTTCTCATCCTCTTCTTTTCTCTTTTCTATTCTTCTTCCCATCTCTTGT
CCCTTTCCCCTTTTTTCCTTCCATTTCTTTTCTTTTCCTTTCCCCTAACC
TTTCCCCTCCCTTACCTCCCTCATTAATTCCCTTTTTTCTACCCTTCTTC
ATTCTCTTTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCA
GAGAAACACCTTAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATACTTCTCCTGGCCCTACATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCCCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCCAGATGCTCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGGTAA
GTGGATATTAGCCCAAAACCTAGGATATCCAAGATATAAGATACAATTTC
CTAATCACATGAAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_i13.b1 MSMg01no232_i13.b1 CHROMAT_FILE:
MSMg01no232_i13.b1 PHD_FILE: MSMg01no232_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:02 2005
         (285 letters)



>mm_chr8_54380286_54380968
          Length = 683

 Score =  387 bits (200), Expect = e-112
 Identities = 252/272 (92%), Gaps = 9/272 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgctgtcctttacactaggagacgtgagaaacacattttaacgagtaacttttg 64
           |||||||||||   |||||||||||||| |||||||  ||||||||||||||||||||||
Sbjct: 388 gaattctgctgggatttacactaggagatgtgagaa--acattttaacgagtaacttttg 331

                                                                       
Query: 65  tttttaatgctccctaagattttgcaagggtgcatcttaaatgtgatgaactaatgaatc 124
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 330 ttttgaatgctccctaagattttgcaagggtgaatcttaaatgtgatgaactaatgaatc 271

                                                                       
Query: 125 tggaacagaaaatctaagaggatttaatatgaaagagtgttatagttatcaacttcagct 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 270 tggaacagaaaatctaagaggatttaatatgaaagagtgttatagttatcaatttcagct 211

                                                                       
Query: 185 tcccacaattttttaaatttaattttatttgtaattggtttttttctgttatttatttat 244
           ||||||||||||| ||||||||||||||||||||||  |||||| || ||||||||||||
Sbjct: 210 tcccacaatttttaaaatttaattttatttgtaattaatttttt-cttttatttatttat 152

                                           
Query: 245 ttatttattt-att--tatt---tatttattt 270
           |||||||||| |||  ||||   |||||||||
Sbjct: 151 ttatttattttattattattgggtatttattt 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 683
Length adjustment: 9
Effective length of query: 276
Effective length of database: 674
Effective search space:   186024
Effective search space used:   186024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)